RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 POLQO75417 2590 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 TRAV34A0A0B4J273 112 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 CA1P00915 261 aaPredicted RBP11.87□□□□□ -0.51
SF3B4-201ENST00000271628 NRN1Q9NPD7 142 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 RPH3ALQ9UNE2 315 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 APCP25054 2843 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 ZNF324O75467 553 aaPredicted RBP11.87□□□□□ -0.51
SF3B4-201ENST00000271628 FSHBP01225 129 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 PSG9Q00887 426 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 TDRG1Q3Y452 100 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 CYB5R2Q6BCY4 276 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 SIGLEC15Q6ZMC9 328 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 BCL6BQ8N143 479 aaPredicted RBP11.87□□□□□ -0.51
SF3B4-201ENST00000271628 EXOC3-AS1Q8N2X6 119 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 NUP35Q8NFH5 326 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 OR4B1Q8NGF8 309 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 TSKUQ8WUA8 353 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 AAMDCQ9H7C9 122 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 ZFAND3Q9H8U3 227 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 ZNF580Q9UK33 172 aa11.87□□□□□ -0.51
SF3B4-201ENST00000271628 K7EQM0 130 aa11.86□□□□□ -0.51
SF3B4-201ENST00000271628 ZNF705AQ6ZN79 300 aaPredicted RBP11.86□□□□□ -0.51
SF3B4-201ENST00000271628 ATP5L2Q7Z4Y8 100 aa11.86□□□□□ -0.51
SF3B4-201ENST00000271628 RCHY1Q96PM5 261 aa11.86□□□□□ -0.51
SF3B4-201ENST00000271628 CR1P17927 2039 aa11.86□□□□□ -0.51
SF3B4-201ENST00000271628 TCAPO15273 167 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 IGHV4-59P01825 116 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 KRTDAPP60985 99 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 ARL6IP6Q8N6S5 226 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 C17orf77Q96MU5 243 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 MLST8Q9BVC4 326 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 PAM16Q9Y3D7 125 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 NAV2Q8IVL1 2488 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 DIRC3C9JPN6 131 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 LTAP01374 205 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 SLAQ13239 276 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 NEU1Q99519 415 aa11.85□□□□□ -0.51
SF3B4-201ENST00000271628 ABCA12Q86UK0 2595 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 IGHV3-35A0A0C4DH35 117 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 A0A0G2JLM5 398 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 TRBV6-1A0A0K0K1D8 114 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 KRTAP1-3Q8IUG1 177 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 Q8N976 141 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 C18orf32Q8TCD1 76 aa11.84□□□□□ -0.51
SF3B4-201ENST00000271628 SERTM2A0A1B0GWG4 89 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 HIGD1CA8MV81 97 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 BUB3O43684 328 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 PMCHP20382 165 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 KLF5Q13887 457 aaPredicted RBP11.83□□□□□ -0.51
SF3B4-201ENST00000271628 PRR27Q6MZM9 219 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 Q6YL49 198 aa11.83□□□□□ -0.51
SF3B4-201ENST00000271628 IGLV1-40P01703 118 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 CSN1S1P47710 185 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 CT83Q5H943 113 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 GOLT1AQ6ZVE7 132 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 TMEM75Q8N9X5 138 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 SGK494Q96LW2 274 aa11.83□□□□□ -0.52
SF3B4-201ENST00000271628 ARL3P36405 182 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 BORCS7Q96B45 105 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 METTL26Q96S19 204 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 RNF114Q9Y508 228 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 PRRC2AP48634 2157 aaKnown RBP11.82□□□□□ -0.52
SF3B4-201ENST00000271628 NBPF19A0A087WUL8 3843 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 PF4V1P10720 104 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 Q6ZS46 218 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 NIT1Q86X76 327 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 TEX29Q8N6K0 151 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 PRSS22Q9GZN4 317 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 ZNF492Q9P255 531 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 VPREB3Q9UKI3 123 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 ZFP30Q9Y2G7 519 aa11.82□□□□□ -0.52
SF3B4-201ENST00000271628 ZANQ9Y493 2812 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 A0A1B0GXF2 115 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 CLPSL1A2RUU4 121 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 A8MWL6 223 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 Q86TA4 180 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 RPP21Q9H633 154 aaKnown RBP11.81□□□□□ -0.52
SF3B4-201ENST00000271628 CSPG4Q6UVK1 2322 aa11.81□□□□□ -0.52
SF3B4-201ENST00000271628 IGHV3OR16-8A0A075B7F1 116 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 A0A087X0K7 114 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.8□□□□□ -0.52
SF3B4-201ENST00000271628 IGLV2-11P01706 119 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 C3orf79P0CE67 100 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 CTRLP40313 264 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 CFHR3Q02985 330 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 PSG3Q16557 428 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 FAM162BQ5T6X4 162 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 GDF5OSQ5U4N7 250 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 ALKBH7Q9BT30 221 aaPredicted RBP11.8□□□□□ -0.52
SF3B4-201ENST00000271628 GFRA4Q9GZZ7 299 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 SMAD5-AS1Q9Y6J3 95 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 NDUFA4O00483 81 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 PRNTQ86SH4 94 aa11.8□□□□□ -0.52
SF3B4-201ENST00000271628 DAZAP1Q96EP5 407 aaKnown RBP11.8□□□□□ -0.52
SF3B4-201ENST00000271628 TRAV8-1A0A0A6YYK1 113 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 TMEM89A2RUT3 159 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 C19orf71A6NCJ1 209 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 FAM231BA6NCW3 169 aa11.79□□□□□ -0.52
SF3B4-201ENST00000271628 FBLL1A6NHQ2 334 aaKnown RBP11.79□□□□□ -0.52
SF3B4-201ENST00000271628 ZNF785A8K8V0 405 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms