RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CHEK1O14757 476 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 Q86TA4 180 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 NUDT10Q8NFP7 164 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 TMEM190Q8WZ59 177 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 NUDT11Q96G61 164 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 RNF24Q9Y225 148 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 VWFP04275 2813 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 C1orf196B1AJZ1 125 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 LCN12Q6JVE5 192 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 C8orf86Q6ZUL3 223 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 U3KQE9 123 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 TFPI2P48307 235 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 FLI1Q01543 452 aaPredicted RBP12.57□□□□□ -0.4
USP4-201ENST00000265560 PSG8Q9UQ74 426 aa12.57□□□□□ -0.4
USP4-201ENST00000265560 BRI3O95415 125 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 SSTP61278 116 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 FOXE3Q13461 319 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 FMC1Q96HJ9 113 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 LTAP01374 205 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 GZMBP10144 247 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 CSN1S1P47710 185 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 SLURP1P55000 103 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 PDE6HQ13956 83 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 GLMPQ8WWB7 406 aa12.56□□□□□ -0.4
USP4-201ENST00000265560 TRAV8-2A0A0B4J237 113 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 RPL19P84098 196 aaKnown RBP12.55□□□□□ -0.4
USP4-201ENST00000265560 PSG9Q00887 426 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 C16orf54Q6UWD8 224 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 MLST8Q9BVC4 326 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 SAV1Q9H4B6 383 aaPredicted RBP12.55□□□□□ -0.4
USP4-201ENST00000265560 DAZ1Q9NQZ3 744 aaKnown RBP12.55□□□□□ -0.4
USP4-201ENST00000265560 LY96Q9Y6Y9 160 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 PSG3Q16557 428 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 FAM106AQ4KMX7 169 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 ZC2HC1AQ96GY0 325 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 C16orf92Q96LL3 132 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 GPR61Q9BZJ8 451 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 ELANEP08246 267 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 CD99P14209 185 aa12.55□□□□□ -0.4
USP4-201ENST00000265560 HOXD3P31249 432 aaPredicted RBP12.55□□□□□ -0.4
USP4-201ENST00000265560 TRBV24-1A0A075B6N3 115 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 FAM209BQ5JX69 171 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 KCNIP4Q6PIL6 250 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 GPHB5Q86YW7 130 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 LYPD1Q8N2G4 141 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 PPP1R2P9O14990 202 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 Q8N2B8 174 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 C20orf173Q96LM9 149 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 IL36BQ9NZH7 164 aa12.54□□□□□ -0.4
USP4-201ENST00000265560 IGHV7-4-1A0A0J9YVY3 117 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 LGALS1P09382 135 aaKnown RBP12.53□□□□□ -0.4
USP4-201ENST00000265560 RAB5BP61020 215 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 SNRPEP62304 92 aaKnown RBP12.53□□□□□ -0.4
USP4-201ENST00000265560 MRPL54Q6P161 138 aaKnown RBP12.53□□□□□ -0.4
USP4-201ENST00000265560 FRZBQ92765 325 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 F6UB75 175 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 J3KRW8 73 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 GATCO43716 136 aaKnown RBP12.53□□□□□ -0.4
USP4-201ENST00000265560 TEX29Q8N6K0 151 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 OR11H1Q8NG94 326 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 UBE2E2Q96LR5 201 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 ZNF580Q9UK33 172 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 TMSB15BA0A087X1C1 80 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 TCF24Q7RTU0 167 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 KLHL30-AS1Q8NEE0 82 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 IMMP2LQ96T52 175 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 OSTCQ9NRP0 149 aa12.53□□□□□ -0.4
USP4-201ENST00000265560 TMEM213A2RRL7 107 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 K7EQM0 130 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 FOLR2P14207 255 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 CRIP1P50238 77 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 C1orf194Q5T5A4 169 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 ATP6V0BQ99437 205 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 TCEAL7Q9BRU2 100 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 SMPXQ9UHP9 88 aa12.52□□□□□ -0.4
USP4-201ENST00000265560 CBLN1P23435 193 aa12.52□□□□□ -0.41
USP4-201ENST00000265560 FABP9Q0Z7S8 132 aa12.52□□□□□ -0.41
USP4-201ENST00000265560 CD28P10747 220 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 TMEM183AQ8IXX5 376 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 TMEM86BQ8N661 226 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 WFDC12Q8WWY7 111 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 S100A7P31151 101 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 FOXL1Q12952 345 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 Q6ZQT7 251 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 TMEM75Q8N9X5 138 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 LINC01006Q8NI28 216 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 MYOZ3Q8TDC0 251 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 ZNF418Q8TF45 676 aaPredicted RBP12.51□□□□□ -0.41
USP4-201ENST00000265560 DAZAP1Q96EP5 407 aaKnown RBP12.51□□□□□ -0.41
USP4-201ENST00000265560 PYGO2Q9BRQ0 406 aa12.51□□□□□ -0.41
USP4-201ENST00000265560 P01737 135 aa12.5□□□□□ -0.41
USP4-201ENST00000265560 TRGC1P0CF51 173 aa12.5□□□□□ -0.41
USP4-201ENST00000265560 A0A087X0K7 114 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 MUC21A0A0G2JKD1 596 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 MUC21A0A140T8X8 626 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BKO60814 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 S100A6P06703 90 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BJP06899 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BOP23527 126 aa12.49□□□□□ -0.41
USP4-201ENST00000265560 HIST1H2BBP33778 126 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms