RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 IGHV3-23P01764 117 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 RPL7P18124 248 aaKnown RBP11.91□□□□□ -0.5
DDX56-201ENST00000258772 LINC01545Q5VT33 79 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 C11orf71Q6IPW1 123 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 SLC25A34Q6PIV7 304 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 FA2HQ7L5A8 372 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 Q8N6K4 173 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 ZNF738Q8NE65 137 aa11.91□□□□□ -0.5
DDX56-201ENST00000258772 CSMD1Q96PZ7 3565 aa11.9□□□□□ -0.5
DDX56-201ENST00000258772 TMSB15BA0A087X1C1 80 aa11.9□□□□□ -0.5
DDX56-201ENST00000258772 SH2D1AO60880 128 aa11.9□□□□□ -0.5
DDX56-201ENST00000258772 ADORA2A-AS1P86434 159 aa11.9□□□□□ -0.5
DDX56-201ENST00000258772 ZNF747Q9BV97 191 aa11.9□□□□□ -0.5
DDX56-201ENST00000258772 IGKV2-40A0A087WW87 121 aaPredicted RBP11.89□□□□□ -0.51
DDX56-201ENST00000258772 OR2T8A6NH00 312 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 IGKV2D-40P01614 121 aaPredicted RBP11.89□□□□□ -0.51
DDX56-201ENST00000258772 CTSGP08311 255 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 MPV17L2Q567V2 206 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 COX8CQ7Z4L0 72 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 SCRT2Q9NQ03 307 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 TMEM213A2RRL7 107 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 CCL25O15444 150 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 IFI27P40305 119 aaPredicted RBP11.89□□□□□ -0.51
DDX56-201ENST00000258772 EBI3Q14213 229 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 SAPCD1Q5SSQ6 148 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 OR10AG1Q8NH19 301 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 PRR25Q96S07 402 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 PMCHL2Q9BQD1 86 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 MS4A6AQ9H2W1 248 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 MED13LQ71F56 2210 aa11.89□□□□□ -0.51
DDX56-201ENST00000258772 D6R8Y8 96 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 PTTG1IPP53801 180 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 FAM104BQ5XKR9 115 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 OOSP1A8MZH6 123 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 FAM106CPP0CH98 169 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 EGR2P11161 476 aaPredicted RBP11.88□□□□□ -0.51
DDX56-201ENST00000258772 FAM106AQ4KMX7 169 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 SMAD5-AS1Q9Y6J3 95 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 U3KQK5 164 aa11.88□□□□□ -0.51
DDX56-201ENST00000258772 NUDT3O95989 172 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 MINOS1Q5TGZ0 78 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 AMN1Q8IY45 258 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 RABAC1Q9UI14 185 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 MINOS1-NBL1R4GNA1 71 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 IGHV7-81A0A0B4J1V7 117 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 UBE2V1Q13404 147 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 SIGLEC8Q9NYZ4 499 aa11.87□□□□□ -0.51
DDX56-201ENST00000258772 A0A096LNJ9 63 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 LOC389332A0A1B0GUA5 103 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 FBLL1A6NHQ2 334 aaKnown RBP11.86□□□□□ -0.51
DDX56-201ENST00000258772 SCGB2A1O75556 95 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 IGHG4P01861 327 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 ZFP36P26651 326 aaKnown RBP11.86□□□□□ -0.51
DDX56-201ENST00000258772 PRELID3AQ96N28 172 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 VGLL1Q99990 258 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 MUC21A0A0G2JKD1 596 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 MUC21A0A140T8X8 626 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 GOSR1O95249 250 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 NCR2O95944 276 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 LOXL1Q08397 574 aaPredicted RBP11.86□□□□□ -0.51
DDX56-201ENST00000258772 MUC21Q5SSG8 566 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 IGFL4Q6B9Z1 124 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 ORMDL3Q8N138 153 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 MSRB2Q9Y3D2 182 aa11.86□□□□□ -0.51
DDX56-201ENST00000258772 ZNF80P51504 273 aaPredicted RBP11.85□□□□□ -0.51
DDX56-201ENST00000258772 ODF1Q14990 250 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 MRPL51Q4U2R6 128 aaKnown RBP11.85□□□□□ -0.51
DDX56-201ENST00000258772 BVES-AS1Q5T3Y7 98 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 Q8TAT8 98 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 HRNRQ86YZ3 2850 aaPredicted RBP11.85□□□□□ -0.51
DDX56-201ENST00000258772 IGHV3OR16-8A0A075B7F1 116 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 HLA-DMBP28068 263 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 BMI1P35226 326 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 COTL1Q14019 142 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 Q8N9W7 124 aa11.85□□□□□ -0.51
DDX56-201ENST00000258772 IGHV3-35A0A0C4DH35 117 aa11.84□□□□□ -0.51
DDX56-201ENST00000258772 RPS20P60866 119 aaKnown RBP11.84□□□□□ -0.51
DDX56-201ENST00000258772 C12orf54Q6X4T0 127 aa11.84□□□□□ -0.51
DDX56-201ENST00000258772 ZNF575Q86XF7 245 aa11.84□□□□□ -0.51
DDX56-201ENST00000258772 KLRB1Q12918 225 aa11.83□□□□□ -0.51
DDX56-201ENST00000258772 FER1L6-AS1Q8NA97 138 aa11.83□□□□□ -0.51
DDX56-201ENST00000258772 IGLC6P0CF74 106 aa11.83□□□□□ -0.52
DDX56-201ENST00000258772 COX8AP10176 69 aa11.83□□□□□ -0.52
DDX56-201ENST00000258772 TWIST1Q15672 202 aa11.83□□□□□ -0.52
DDX56-201ENST00000258772 SIRPDQ9H106 197 aa11.83□□□□□ -0.52
DDX56-201ENST00000258772 CBY1Q9Y3M2 126 aa11.83□□□□□ -0.52
DDX56-201ENST00000258772 SPTBN1Q01082 2364 aaKnown RBP11.83□□□□□ -0.52
DDX56-201ENST00000258772 DTX2Q86UW9 622 aa11.82□□□□□ -0.52
DDX56-201ENST00000258772 OR8A1Q8NGG7 326 aa11.82□□□□□ -0.52
DDX56-201ENST00000258772 TAX1BP3O14907 124 aa11.82□□□□□ -0.52
DDX56-201ENST00000258772 S100A7P31151 101 aa11.82□□□□□ -0.52
DDX56-201ENST00000258772 HIST1H1AQ02539 215 aaPredicted RBP11.82□□□□□ -0.52
DDX56-201ENST00000258772 CACNA1BQ00975 2339 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 A0A087X0K7 114 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 IGHV2-70DA0A0C4DH43 119 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 GPR183P32249 361 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 CKS2P33552 79 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 PAX8Q06710 450 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 C15orf32Q32M92 178 aa11.81□□□□□ -0.52
DDX56-201ENST00000258772 PIP4P2Q8N4L2 257 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms