RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 IGHV1OR15-1A0A075B7D0 117 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 K7EIM0 57 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 PRSS2P07478 247 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 CXCL1P09341 107 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 PPIFP30405 207 aaKnown RBP10.73□□□□□ -0.69
LDLR-201ENST00000252444 LINC00205P59089 165 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 FXYD5Q96DB9 178 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 MED14OSP0DP75 135 aa10.73□□□□□ -0.69
LDLR-201ENST00000252444 HOXD3P31249 432 aaPredicted RBP10.72□□□□□ -0.69
LDLR-201ENST00000252444 EIF4EBP1Q13541 118 aaPredicted RBP10.72□□□□□ -0.69
LDLR-201ENST00000252444 SH2D6Q7Z4S9 175 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 HAPLN4Q86UW8 402 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 PKIGQ9Y2B9 76 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 MYO7BQ6PIF6 2116 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 ALPK2Q86TB3 2170 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 EXPH5Q8NEV8 1989 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 GRIFINA4D1Z8 144 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 IGHG4P01861 327 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 SRSF9Q13242 221 aaKnown RBP eCLIP10.72□□□□□ -0.69
LDLR-201ENST00000252444 ZNF493Q6ZR52 646 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 OR9G4Q8NGQ1 327 aa10.72□□□□□ -0.69
LDLR-201ENST00000252444 IGHV3OR16-8A0A075B7F1 116 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 M0R3E3 92 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 EIF3GO75821 320 aaKnown RBP eCLIP10.71□□□□□ -0.69
LDLR-201ENST00000252444 IGLV2-14P01704 120 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 COX6CP09669 75 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 LAGE3Q14657 143 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 ODF3Q96PU9 254 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 PYGO2Q9BRQ0 406 aa10.71□□□□□ -0.69
LDLR-201ENST00000252444 CRIP3Q6Q6R5 217 aa10.71□□□□□ -0.7
LDLR-201ENST00000252444 PRR25Q96S07 402 aa10.71□□□□□ -0.7
LDLR-201ENST00000252444 H3BVH4 76 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 ZNF324O75467 553 aaPredicted RBP10.7□□□□□ -0.7
LDLR-201ENST00000252444 NDPQ00604 133 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 OR11H2Q8NH07 326 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 WISP2O76076 250 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 DNLZQ5SXM8 178 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 C10orf91Q5T1B1 145 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 RIF1Q5UIP0 2472 aaKnown RBP10.7□□□□□ -0.7
LDLR-201ENST00000252444 OTOGLQ3ZCN5 2332 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 FBLN7Q53RD9 439 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 SLC25A34Q6PIV7 304 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 GTF2H5Q6ZYL4 71 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 MUC21Q5SSG8 566 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 MUC6Q6W4X9 2439 aa10.7□□□□□ -0.7
LDLR-201ENST00000252444 LTAP01374 205 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 CRYGBP07316 175 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 LINC00614P0C842 121 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 SCGB1C2P0DMR2 95 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 MAPK1IP1LQ8NDC0 245 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 CFHR4Q92496 578 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 CPAMD8Q8IZJ3 1885 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 BRI3O95415 125 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 CRPP02741 224 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 LYZL1Q6UWQ5 148 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 VCX2Q9H322 139 aa10.69□□□□□ -0.7
LDLR-201ENST00000252444 DOCK7Q96N67 2140 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 TMEM262E9PQX1 116 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 HOXA5P20719 270 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 CFAP161Q6P656 301 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 FNDC4Q9H6D8 234 aaPredicted RBP10.68□□□□□ -0.7
LDLR-201ENST00000252444 TYMSP04818 313 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 GLMPQ8WWB7 406 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 APC2O95996 2303 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 RNASE1P07998 156 aaKnown RBP10.68□□□□□ -0.7
LDLR-201ENST00000252444 C11orf1Q9H5F2 150 aa10.68□□□□□ -0.7
LDLR-201ENST00000252444 ZMAT4Q9H898 229 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 TRAV12-3A0A0B4J271 114 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 DNAJC9-AS1A6NH13 148 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 NDUFA7O95182 113 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 CTSGP08311 255 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 NUP35Q8NFH5 326 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 TMEM141Q96I45 108 aa10.67□□□□□ -0.7
LDLR-201ENST00000252444 MLANAQ16655 118 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 TNRC6AQ8NDV7 1962 aaKnown RBP10.66□□□□□ -0.7
LDLR-201ENST00000252444 VWC2LB2RUY7 222 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 UBE2CO00762 179 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 RMI2Q96E14 147 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 MS4A6AQ9H2W1 248 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 DOCK10Q96BY6 2186 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 GP9P14770 177 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 SPATA45Q537H7 98 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 RAB37Q96AX2 223 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 DNAJC30Q96LL9 226 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 TRAV8-6A0A0B4J262 113 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 C11orf44Q8N8P7 122 aa10.66□□□□□ -0.7
LDLR-201ENST00000252444 TRGV1A0A0A0MS02 117 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 ADMP35318 185 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 WIPF2Q8TF74 440 aaPredicted RBP10.65□□□□□ -0.7
LDLR-201ENST00000252444 C5orf30Q96GV9 206 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 MED12Q93074 2177 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 SMIM27A0A1W2PRY6 76 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 SUMO2P61956 95 aaKnown RBP10.65□□□□□ -0.7
LDLR-201ENST00000252444 GTF3C1Q12789 2109 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 DPM2O94777 84 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 ZNF726P1Q15940 193 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 Q8N6K4 173 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 C16orf74Q96GX8 76 aa10.65□□□□□ -0.7
LDLR-201ENST00000252444 ADARB2-AS1A8MUL3 147 aa10.65□□□□□ -0.71
LDLR-201ENST00000252444 PLEKHB2Q96CS7 222 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms