RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CA1P00915 261 aaPredicted RBP17.38■□□□□ 0.37
CDX1-201ENST00000231656 RAB9AP51151 201 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 RELQ04864 619 aaPredicted RBP17.38■□□□□ 0.37
CDX1-201ENST00000231656 ZNF492Q9P255 531 aa17.38■□□□□ 0.37
CDX1-201ENST00000231656 DIRC3C9JPN6 131 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 S100A8P05109 93 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 SLC35B1P78383 322 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 PSG9Q00887 426 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 GFI1BQ5VTD9 330 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 TMEM183AQ8IXX5 376 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 GRAMD2BQ96HH9 432 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 AAMDCQ9H7C9 122 aa17.37■□□□□ 0.37
CDX1-201ENST00000231656 TEP1Q99973 2627 aaKnown RBP17.37■□□□□ 0.37
CDX1-201ENST00000231656 TMEM89A2RUT3 159 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 M0R3E3 92 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 TCF21O43680 179 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 BUB3O43684 328 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 TCL1AP56279 114 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 LINC00322Q6ZN03 302 aaPredicted RBP17.36■□□□□ 0.37
CDX1-201ENST00000231656 HIST3H2BBQ8N257 126 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 USMG5Q96IX5 58 aa17.36■□□□□ 0.37
CDX1-201ENST00000231656 C19orf71A6NCJ1 209 aa17.35■□□□□ 0.37
CDX1-201ENST00000231656 FRMD6-AS1P0C7T7 363 aa17.35■□□□□ 0.37
CDX1-201ENST00000231656 PRNTQ86SH4 94 aa17.35■□□□□ 0.37
CDX1-201ENST00000231656 SETD2Q9BYW2 2564 aaPredicted RBP17.35■□□□□ 0.37
CDX1-201ENST00000231656 ZNF253O75346 499 aa17.35■□□□□ 0.37
CDX1-201ENST00000231656 CBLN1P23435 193 aa17.35■□□□□ 0.37
CDX1-201ENST00000231656 COA6Q5JTJ3 125 aaKnown RBP17.35■□□□□ 0.37
CDX1-201ENST00000231656 A0A087X0K7 114 aa17.34■□□□□ 0.37
CDX1-201ENST00000231656 FOXE3Q13461 319 aa17.34■□□□□ 0.37
CDX1-201ENST00000231656 PSG3Q16557 428 aa17.34■□□□□ 0.37
CDX1-201ENST00000231656 U3KQE9 123 aa17.34■□□□□ 0.37
CDX1-201ENST00000231656 IZUMO1RA6ND01 250 aa17.33■□□□□ 0.37
CDX1-201ENST00000231656 K7EQM0 130 aa17.33■□□□□ 0.37
CDX1-201ENST00000231656 ARL6IP6Q8N6S5 226 aa17.33■□□□□ 0.37
CDX1-201ENST00000231656 C16orf95Q9H693 158 aa17.33■□□□□ 0.37
CDX1-201ENST00000231656 PSG8Q9UQ74 426 aa17.33■□□□□ 0.37
CDX1-201ENST00000231656 A0A0G2JLM5 398 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 XKRY2A2RUG3 117 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 ELANEP08246 267 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 ARL3P36405 182 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 MEOX2P50222 304 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 C1orf194Q5T5A4 169 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 METTL26Q96S19 204 aa17.33■□□□□ 0.36
CDX1-201ENST00000231656 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.32■□□□□ 0.36
CDX1-201ENST00000231656 TRBV12-3P01733 135 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 APOHP02749 345 aaPredicted RBP17.32■□□□□ 0.36
CDX1-201ENST00000231656 KLHDC1Q8N7A1 406 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 TSKUQ8WUA8 353 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 GNB1LQ9BYB4 327 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 GPR61Q9BZJ8 451 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 RPP21Q9H633 154 aaKnown RBP17.32■□□□□ 0.36
CDX1-201ENST00000231656 ZFP30Q9Y2G7 519 aa17.32■□□□□ 0.36
CDX1-201ENST00000231656 SERTM2A0A1B0GWG4 89 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 ZNF785A8K8V0 405 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 SPINK4O60575 86 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 IGHV3-11P01762 117 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 RPLP1P05386 114 aaKnown RBP17.31■□□□□ 0.36
CDX1-201ENST00000231656 RPL19P84098 196 aaKnown RBP17.31■□□□□ 0.36
CDX1-201ENST00000231656 RNF152Q8N8N0 203 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 C12orf57Q99622 126 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 MRPL18Q9H0U6 180 aaKnown RBP17.31■□□□□ 0.36
CDX1-201ENST00000231656 ZNF331Q9NQX6 463 aaPredicted RBP17.31■□□□□ 0.36
CDX1-201ENST00000231656 C2CD3Q4AC94 2353 aa17.31■□□□□ 0.36
CDX1-201ENST00000231656 PRB4P10163 310 aaPredicted RBP17.3■□□□□ 0.36
CDX1-201ENST00000231656 CSN1S1P47710 185 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 SRSF2Q01130 221 aaKnown RBP17.3■□□□□ 0.36
CDX1-201ENST00000231656 CT83Q5H943 113 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 LINC01006Q8NI28 216 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 IGHV3-66A0A0C4DH42 116 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 NPIPB6E9PJ23 425 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 ZNF207O43670 478 aaKnown RBP17.3■□□□□ 0.36
CDX1-201ENST00000231656 NUP35Q8NFH5 326 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 MYOZ3Q8TDC0 251 aa17.3■□□□□ 0.36
CDX1-201ENST00000231656 SNURFLB1AK76 121 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 NDUFA7O95182 113 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 P01737 135 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 SMIM6P0DI80 62 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 COX19Q49B96 90 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 PDZD11Q5EBL8 140 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 WDR73Q6P4I2 378 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 TMEM136Q6ZRR5 245 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 ZC2HC1AQ96GY0 325 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 NEU1Q99519 415 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 NAT8BQ9UHF3 227 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 JMJD1CQ15652 2540 aa17.29■□□□□ 0.36
CDX1-201ENST00000231656 MRPL54Q6P161 138 aaKnown RBP17.28■□□□□ 0.36
CDX1-201ENST00000231656 C16orf54Q6UWD8 224 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 GBGT1Q8N5D6 347 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 OR4X2Q8NGF9 303 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 NDUFA4O00483 81 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 CHEK1O14757 476 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 MT-ND6P03923 174 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 HLA-DMBP28068 263 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 WIPF2Q8TF74 440 aaPredicted RBP17.28■□□□□ 0.36
CDX1-201ENST00000231656 DAZAP1Q96EP5 407 aaKnown RBP17.28■□□□□ 0.36
CDX1-201ENST00000231656 ASCL2Q99929 193 aa17.28■□□□□ 0.36
CDX1-201ENST00000231656 IGHV3OR16-13A0A075B7E8 117 aa17.27■□□□□ 0.35
CDX1-201ENST00000231656 IGHV3-49A0A0A0MS15 119 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms