RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 HIGD1CA8MV81 97 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 NPIPB6E9PJ23 425 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 HLA-DQA1P01909 254 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 RAB4BP61018 213 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 LCN12Q6JVE5 192 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 WIPF2Q8TF74 440 aaPredicted RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 ZC2HC1AQ96GY0 325 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 PEF1Q9UBV8 284 aaKnown RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 SVEP1Q4LDE5 3571 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 IGKV2-40A0A087WW87 121 aaPredicted RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 SMAD7O15105 426 aaKnown RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 IGKV2D-40P01614 121 aaPredicted RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 SMIM6P0DI80 62 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 UNQ9165/PRO28630Q6UXU0 137 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 LCNL1Q6ZST4 164 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 ATP5L2Q7Z4Y8 100 aa13.36□□□□□ -0.27
VRK1-201ENST00000216639 MRPL53Q96EL3 112 aaKnown RBP13.36□□□□□ -0.27
VRK1-201ENST00000216639 CSMD1Q96PZ7 3565 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 PDZD11Q5EBL8 140 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 GFI1BQ5VTD9 330 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 TMEM136Q6ZRR5 245 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 OR2D3Q8NGH3 330 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 GLMPQ8WWB7 406 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 C12orf57Q99622 126 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 NDFIP1Q9BT67 221 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 GPR61Q9BZJ8 451 aa13.35□□□□□ -0.27
VRK1-201ENST00000216639 USP9YO00507 2555 aaPredicted RBP13.34□□□□□ -0.27
VRK1-201ENST00000216639 RBAKDNA6NC62 111 aa13.34□□□□□ -0.27
VRK1-201ENST00000216639 FAM106AQ4KMX7 169 aa13.34□□□□□ -0.27
VRK1-201ENST00000216639 IGFL4Q6B9Z1 124 aa13.34□□□□□ -0.27
VRK1-201ENST00000216639 FOXC2Q99958 501 aa13.34□□□□□ -0.27
VRK1-201ENST00000216639 ZNF702PQ9H963 129 aa13.34□□□□□ -0.27
VRK1-201ENST00000216639 IFITM10A6NMD0 228 aa13.33□□□□□ -0.27
VRK1-201ENST00000216639 ELANEP08246 267 aa13.33□□□□□ -0.27
VRK1-201ENST00000216639 HLA-DMBP28068 263 aa13.33□□□□□ -0.27
VRK1-201ENST00000216639 C8orf86Q6ZUL3 223 aa13.33□□□□□ -0.27
VRK1-201ENST00000216639 PTPN13Q12923 2485 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 ZNF705FA8MVS1 300 aaPredicted RBP13.33□□□□□ -0.28
VRK1-201ENST00000216639 FRMD6-AS1P0C7T7 363 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 FOXE3Q13461 319 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 RBPMS2Q6ZRY4 209 aaKnown RBP13.33□□□□□ -0.28
VRK1-201ENST00000216639 TCF24Q7RTU0 167 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 COX8CQ7Z4L0 72 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 TMEM86BQ8N661 226 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 SIGLECL1Q8N7X8 197 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 PRR25Q96S07 402 aa13.33□□□□□ -0.28
VRK1-201ENST00000216639 DAZ1Q9NQZ3 744 aaKnown RBP13.33□□□□□ -0.28
VRK1-201ENST00000216639 CRISP2P16562 243 aa13.32□□□□□ -0.28
VRK1-201ENST00000216639 C16orf92Q96LL3 132 aa13.32□□□□□ -0.28
VRK1-201ENST00000216639 C8orf49Q96NF6 230 aa13.32□□□□□ -0.28
VRK1-201ENST00000216639 CSMD2Q7Z408 3487 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 K7EMT4 169 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 APCSP02743 223 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 PRB4P10163 310 aaPredicted RBP13.31□□□□□ -0.28
VRK1-201ENST00000216639 FABP4P15090 132 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 FAM162BQ5T6X4 162 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 GPHB5Q86YW7 130 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 RNF182Q8N6D2 247 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 VGLL1Q99990 258 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 CELSR2Q9HCU4 2923 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 NAV2Q8IVL1 2488 aa13.31□□□□□ -0.28
VRK1-201ENST00000216639 IGHV7-4-1A0A0J9YVY3 117 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 BMI1P35226 326 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 HBBP68871 147 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 GTSF1Q8WW33 167 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 ASCL2Q99929 193 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 TRAV8-2A0A0B4J237 113 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 CRIP1P50238 77 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 Q6AWC8 147 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 OR10D4PQ8NGN7 298 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 PGLYRP4Q96LB8 373 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 HIST1H2BLQ99880 126 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 UFC1Q9Y3C8 167 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 POLQO75417 2590 aa13.3□□□□□ -0.28
VRK1-201ENST00000216639 RPLP1P05386 114 aaKnown RBP13.29□□□□□ -0.28
VRK1-201ENST00000216639 FOXA3P55318 350 aaPredicted RBP13.29□□□□□ -0.28
VRK1-201ENST00000216639 Q71RC1 249 aaPredicted RBP13.29□□□□□ -0.28
VRK1-201ENST00000216639 Q8N2B8 174 aa13.29□□□□□ -0.28
VRK1-201ENST00000216639 DOPEY2Q9Y3R5 2298 aa13.29□□□□□ -0.28
VRK1-201ENST00000216639 CSPG4Q6UVK1 2322 aa13.29□□□□□ -0.28
VRK1-201ENST00000216639 A0A1B0GXF2 115 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 CAMPP49913 170 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 TMEM78Q5T7P6 136 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 C10orf99Q6UWK7 81 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 IL17RELQ6ZVW7 336 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 Q8TAT8 98 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 TMEM18Q96B42 140 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 PACRGQ96M98 296 aaPredicted RBP13.28□□□□□ -0.28
VRK1-201ENST00000216639 RHPN1-AS1Q9BWJ2 59 aa13.28□□□□□ -0.28
VRK1-201ENST00000216639 GRIFINA4D1Z8 144 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 TMEM189A5PLL7 270 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 PRAC2D3DTV9 90 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 CD5LO43866 347 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 SH2D1AO60880 128 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 LGALS1P09382 135 aaKnown RBP13.27□□□□□ -0.28
VRK1-201ENST00000216639 RPL11P62913 178 aaKnown RBP13.27□□□□□ -0.28
VRK1-201ENST00000216639 Q0VG73 95 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 TM4SF20Q53R12 229 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 MYOZ3Q8TDC0 251 aa13.27□□□□□ -0.28
VRK1-201ENST00000216639 UBE2E2Q96LR5 201 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms