RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 TRAV9-2A0A087WT02 112 aa10.97□□□□□ -0.65
SIX4-201ENST00000216513 IGHV4-31P0DP07 118 aa10.97□□□□□ -0.65
SIX4-201ENST00000216513 TREML4Q6UXN2 200 aa10.97□□□□□ -0.65
SIX4-201ENST00000216513 MRPS16Q9Y3D3 137 aaKnown RBP10.97□□□□□ -0.65
SIX4-201ENST00000216513 TRAV12-2A0A075B6T6 113 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 TRBV9A0A0B4J1U6 114 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 TMEM250H0YL14 139 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 RSPO3Q9BXY4 272 aaPredicted RBP10.96□□□□□ -0.65
SIX4-201ENST00000216513 A0A087WWL8 130 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 LRRK1Q38SD2 2015 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 IFI27P40305 119 aaPredicted RBP10.96□□□□□ -0.65
SIX4-201ENST00000216513 FBXL19-AS1Q494R0 122 aa10.96□□□□□ -0.65
SIX4-201ENST00000216513 CD28P10747 220 aa10.96□□□□□ -0.66
SIX4-201ENST00000216513 ARFGEF3Q5TH69 2177 aa10.96□□□□□ -0.66
SIX4-201ENST00000216513 VCX2Q9H322 139 aa10.96□□□□□ -0.66
SIX4-201ENST00000216513 MRPL27Q9P0M9 148 aaKnown RBP10.96□□□□□ -0.66
SIX4-201ENST00000216513 TRAV2A0A0B4J234 112 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 PSG3Q16557 428 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 LGALS1P09382 135 aaKnown RBP10.95□□□□□ -0.66
SIX4-201ENST00000216513 COPS9Q8WXC6 57 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 SRSF8Q9BRL6 282 aaKnown RBP10.95□□□□□ -0.66
SIX4-201ENST00000216513 SMAD5-AS1Q9Y6J3 95 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 A0A1B0GWB2 263 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 TRBV6-6A0A0A6YYG2 114 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 A0A0J9YY99 117 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 CD300EQ496F6 205 aaPredicted RBP10.95□□□□□ -0.66
SIX4-201ENST00000216513 ORMDL3Q8N138 153 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.95□□□□□ -0.66
SIX4-201ENST00000216513 NDUFA4O00483 81 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 CKS1BP61024 79 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 TTC9CQ8N5M4 171 aa10.95□□□□□ -0.66
SIX4-201ENST00000216513 SPRY2O43597 315 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 ATP5LO75964 103 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 FHL1Q13642 323 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 Q6ZRM9 215 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 AMBPP02760 352 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 RNASE2P10153 161 aaKnown RBP10.94□□□□□ -0.66
SIX4-201ENST00000216513 ZNF876PQ49A33 203 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GAGE12JA6NER3 117 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 LINC00587B1AMM8 73 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 AZU1P20160 251 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GAGE1Q13065 139 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GAGE4Q13068 117 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GAGE5Q13069 117 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 FOXE3Q13461 319 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GAGE13Q4V321 117 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 GSN-AS1Q9NRJ2 163 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 APRG1Q8IVJ8 170 aa10.94□□□□□ -0.66
SIX4-201ENST00000216513 IZUMO1RA6ND01 250 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 IGF2BP2-AS1Q96M15 143 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 DENND4CQ5VZ89 1909 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 LOC105371267A0A1B0GV96 52 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 SSBP2P81877 361 aaPredicted RBP10.93□□□□□ -0.66
SIX4-201ENST00000216513 C10orf126Q8N4M7 172 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 Q8NFD4 153 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 H3BUT2 72 aa10.93□□□□□ -0.66
SIX4-201ENST00000216513 CACNA1AO00555 2505 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 ZNF815PA8K554 130 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 GGTLC1Q9BX51 225 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 A8MXK9 166 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 NIT1Q86X76 327 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 SMR3AQ99954 134 aa10.92□□□□□ -0.66
SIX4-201ENST00000216513 NHP2Q9NX24 153 aaKnown RBP10.92□□□□□ -0.66
SIX4-201ENST00000216513 RPP25LQ8N5L8 163 aaKnown RBP10.92□□□□□ -0.66
SIX4-201ENST00000216513 hDV102S1A0JD36 115 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 LINC00311Q8N616 119 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 CYTL1Q9NRR1 136 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 OR5A1Q8NGJ0 315 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 KLK5Q9Y337 293 aaPredicted RBP10.91□□□□□ -0.66
SIX4-201ENST00000216513 D6R8Y8 96 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 C8orf49Q96NF6 230 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 IGHV7-4-1A0A0J9YVY3 117 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 C1orf159Q96HA4 380 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 WDR83OSQ9Y284 106 aa10.91□□□□□ -0.66
SIX4-201ENST00000216513 ZNF134P52741 427 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 SHISA2Q6UWI4 295 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 TMEM256Q8N2U0 113 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 LYZL1Q6UWQ5 148 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 PRSS57Q6UWY2 283 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BKO60814 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BJP06899 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BOP23527 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BBP33778 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BDP58876 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BCP62807 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 ID3Q02535 119 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST2H2BEQ16778 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BHQ93079 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BNQ99877 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 HIST1H2BMQ99879 126 aa10.9□□□□□ -0.66
SIX4-201ENST00000216513 ITGB1BP1O14713 200 aa10.9□□□□□ -0.67
SIX4-201ENST00000216513 NOTCH3Q9UM47 2321 aa10.9□□□□□ -0.67
SIX4-201ENST00000216513 C14orf178Q8N769 122 aaPredicted RBP10.89□□□□□ -0.67
SIX4-201ENST00000216513 Q6AWC8 147 aa10.89□□□□□ -0.67
SIX4-201ENST00000216513 OR11H6Q8NGC7 330 aa10.89□□□□□ -0.67
SIX4-201ENST00000216513 Q9HAA7 133 aa10.89□□□□□ -0.67
SIX4-201ENST00000216513 NXT2Q9NPJ8 142 aaKnown RBP10.89□□□□□ -0.67
SIX4-201ENST00000216513 RSPO1Q2MKA7 263 aaPredicted RBP10.89□□□□□ -0.67
SIX4-201ENST00000216513 PRR25Q96S07 402 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms