RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 C14orf177Q52M58 125 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 LYPD1Q8N2G4 141 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 AMELYQ99218 206 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 TRBV6-7A0A0A0MS04 114 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 TMEM14DPA8MWL7 114 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 F8VVB4 439 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 F8VWA3 439 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 NDUFA4O00483 81 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 ELANEP08246 267 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 SPART-AS1P0CW21 52 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 NPC2P61916 151 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 SSBP4Q9BWG4 385 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 SELENOKQ9Y6D0 94 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE12BA1L429 117 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 F8W735 103 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 OVOL3O00110 214 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE7O76087 117 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE12FP0CL80 117 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE12GP0CL81 117 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE12IP0CL82 117 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 GNG5P63218 68 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 SRSF2Q01130 221 aaKnown RBP5.01□□□□□ -1.61
SCN1A-217ENST00000637988 MGST2Q99735 147 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 Q9HAA7 133 aa5.01□□□□□ -1.61
SCN1A-217ENST00000637988 A0A1B0GV72 72 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 CFHR2P36980 270 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 GLRX5Q86SX6 157 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 PINLYPA6NC86 204 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 CXCL3P19876 107 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 ICOSQ9Y6W8 199 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 SIPA1L1O43166 1804 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 PPIFP30405 207 aaKnown RBP5□□□□□ -1.61
SCN1A-217ENST00000637988 ATP5L2Q7Z4Y8 100 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 OR11H7Q8NGC8 314 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 TSKUQ8WUA8 353 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 TIMM21Q9BVV7 248 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 H0YJW9 148 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 GREM1O60565 184 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 LY6G5BQ8NDX9 201 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 DERL1Q9BUN8 251 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 CSTL1Q9H114 145 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 GP9P14770 177 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 MRPL27Q9P0M9 148 aaKnown RBP5□□□□□ -1.61
SCN1A-217ENST00000637988 DENND4CQ5VZ89 1909 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 PRR30Q53SZ7 412 aaPredicted RBP5□□□□□ -1.61
SCN1A-217ENST00000637988 SMAD5-AS1Q9Y6J3 95 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 A0A1W2PRE2 83 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 PAX9P55771 341 aa5□□□□□ -1.61
SCN1A-217ENST00000637988 NUP210LQ5VU65 1888 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 TRAV25A0A0B4J276 109 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 hADV29S1A0JD25 119 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 IGHG3P01860 377 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 TCRAP04437 139 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 LINC00614P0C842 121 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 CDKN1BP46527 198 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 ID3Q02535 119 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE12JA6NER3 117 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE1Q13065 139 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE4Q13068 117 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE5Q13069 117 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE13Q4V321 117 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF479Q96JC4 524 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 PRSS29PA6NIE9 313 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 PMVKQ15126 192 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE2EQ4V326 116 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 ATOH7Q8N100 152 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 CHCHD1Q96BP2 118 aaKnown RBP4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAGE2DQ9UEU5 116 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 I3L3M4 83 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 PDE6HQ13956 83 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 FAM120AOSQ5T036 256 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GGNQ86UU5 652 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 PLPPR1Q8TBJ4 325 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 FAM208BQ5VWN6 2430 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 RHOHQ15669 191 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 LIME1Q9H400 295 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 FBLN5Q9UBX5 448 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 CCL20P78556 96 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 GAFA1Q96PS6 74 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 OTOGLQ3ZCN5 2332 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 PLXNA2O75051 1894 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 IGHV1-24A0A0C4DH33 117 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 LY6HO94772 140 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 SPINK13Q1W4C9 94 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 CT83Q5H943 113 aa4.99□□□□□ -1.61
SCN1A-217ENST00000637988 C4orf51C9J302 202 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 UBE2AP49459 152 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 MRPL23Q16540 153 aaKnown RBP4.98□□□□□ -1.61
SCN1A-217ENST00000637988 MPV17L2Q567V2 206 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 FANCD2OSQ96PS1 177 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 TRBV5-3A0A0A0MS03 114 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 H3BUA1 57 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 BUB3O43684 328 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 MST1P26927 711 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 COL4A5P29400 1685 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 ATP6V0BQ99437 205 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 CLDN16Q9Y5I7 305 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 ATP6V0E1O15342 81 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 SFTA2Q6UW10 78 aa4.98□□□□□ -1.61
SCN1A-217ENST00000637988 ZNF837Q96EG3 531 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms