RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 IGHV3-66A0A0C4DH42 116 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 RAB19A4D1S5 217 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 ZNF253O75346 499 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 APOHP02749 345 aaPredicted RBP7.39□□□□□ -1.23
CLN3-261ENST00000637686 CD7P09564 240 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 FRMD6-AS1P0C7T7 363 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 IGHV4-30-4P0DP06 118 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 CD81P60033 236 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 PDE6HQ13956 83 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 GUK1Q16774 197 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 SAMD13Q5VXD3 122 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 SSX7Q7RTT5 188 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 EIF4E3Q8N5X7 224 aaKnown RBP7.39□□□□□ -1.23
CLN3-261ENST00000637686 ASCL2Q99929 193 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 SLC25A2Q9BXI2 301 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 NKX6-2Q9C056 277 aaPredicted RBP7.39□□□□□ -1.23
CLN3-261ENST00000637686 DOK5Q9P104 306 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 TGP01266 2768 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 DNAH9Q9NYC9 4486 aa7.39□□□□□ -1.23
CLN3-261ENST00000637686 A0A087X0K7 114 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 MRPS12O15235 138 aaKnown RBP7.38□□□□□ -1.23
CLN3-261ENST00000637686 IFNA1P01562 189 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 ARL14EPLP0DKL9 152 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 HIST1H1EP10412 219 aaKnown RBP7.38□□□□□ -1.23
CLN3-261ENST00000637686 GCHFRP30047 84 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 SPATA31B1PQ5VZV4 182 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 C16orf54Q6UWD8 224 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 LCN15Q6UWW0 184 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 UHRF2Q96PU4 802 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 TCEAL7Q9BRU2 100 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 PAXXQ9BUH6 204 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 SCRT1Q9BWW7 348 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 OR51M1Q9H341 326 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 HRH4Q9H3N8 390 aa7.38□□□□□ -1.23
CLN3-261ENST00000637686 IGKV3-7A0A075B6H7 116 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 A0A1W2PRE2 83 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 HELTA6NFD8 242 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 A8MZ25 164 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 OR11H12B2RN74 326 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 TSPAN4O14817 238 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 OR7C2O60412 319 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 IGLC2P0DOY2 106 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 GALR1P47211 349 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 MORN5Q5VZ52 161 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 UQCC3Q6UW78 93 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 SBSPONQ8IVN8 264 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 LYPD1Q8N2G4 141 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 DEFB125Q8N687 156 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 ARL6IP6Q8N6S5 226 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 GLMPQ8WWB7 406 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 FXYD5Q96DB9 178 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 ZNF503Q96F45 646 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 FAM210AQ96ND0 272 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 SPAG8Q99932 426 aaPredicted RBP7.37□□□□□ -1.23
CLN3-261ENST00000637686 WFDC10AQ9H1F0 79 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 TUBA4BQ9H853 241 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 C19orf73Q9NVV2 129 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 CLEC5AQ9NY25 188 aa7.37□□□□□ -1.23
CLN3-261ENST00000637686 BCL2P10415 239 aa7.36□□□□□ -1.23
CLN3-261ENST00000637686 UBE2L3P68036 154 aaKnown RBP7.36□□□□□ -1.23
CLN3-261ENST00000637686 FAM90A2PQ658T7 463 aa7.36□□□□□ -1.23
CLN3-261ENST00000637686 TCF24Q7RTU0 167 aa7.36□□□□□ -1.23
CLN3-261ENST00000637686 OR8I2Q8N0Y5 310 aa7.36□□□□□ -1.23
CLN3-261ENST00000637686 TRAV2A0A0B4J234 112 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 TRAV5A0A0B4J249 113 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 NBEAP1P0C6P0 100 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 NHLRC4P0CG21 123 aaPredicted RBP7.35□□□□□ -1.23
CLN3-261ENST00000637686 TFPI2P48307 235 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 FGF8P55075 233 aaPredicted RBP7.35□□□□□ -1.23
CLN3-261ENST00000637686 RPL11P62913 178 aaKnown RBP7.35□□□□□ -1.23
CLN3-261ENST00000637686 ZNF506Q5JVG8 444 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 SIGLEC15Q6ZMC9 328 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 GBGT1Q8N5D6 347 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 SLC50A1Q9BRV3 221 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 SRD5A3Q9H8P0 318 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 VAX2Q9UIW0 290 aa7.35□□□□□ -1.23
CLN3-261ENST00000637686 TRBV19A0A075B6N1 114 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 LOC102723971A0A1B0GUV8 181 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 RBMY1BA6NDE4 496 aaKnown RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 RBMY1EA6NEQ0 496 aaKnown RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 RBFOX3A6NFN3 312 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 OR4C46A6NHA9 309 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 HMGB3O15347 200 aaKnown RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 RBMY1DP0C7P1 496 aaKnown RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 ATF4P18848 351 aaPredicted RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 CCL20P78556 96 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 PSG9Q00887 426 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 PEA15Q15121 130 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 WFDC3Q8IUB2 231 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 PCNPQ8WW12 178 aaKnown RBP7.34□□□□□ -1.23
CLN3-261ENST00000637686 PRELID1Q9Y255 219 aa7.34□□□□□ -1.23
CLN3-261ENST00000637686 FAM74A7A6NL05 159 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 TMEM250H0YL14 139 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 DNASE2O00115 360 aaPredicted RBP7.33□□□□□ -1.24
CLN3-261ENST00000637686 PDE6DO43924 150 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 PYYP10082 97 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 PAFAH1B2P68402 229 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 MEF2BQ02080 365 aaPredicted RBP7.33□□□□□ -1.24
CLN3-261ENST00000637686 HAGHQ16775 308 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 ODF3L2Q3SX64 289 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms