RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CSTL1Q9H114 145 aa5□□□□□ -1.61
SCN1A-212ENST00000636194 DAZ1Q9NQZ3 744 aaKnown RBP5□□□□□ -1.61
SCN1A-212ENST00000636194 MRPL36Q9P0J6 103 aaKnown RBP5□□□□□ -1.61
SCN1A-212ENST00000636194 S4R3C0 116 aa5□□□□□ -1.61
SCN1A-212ENST00000636194 TMEM178BH3BS89 294 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 C16orf47Q6ZP98 133 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 PIP4P2Q8N4L2 257 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 I3L3M4 83 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 CXCL3P19876 107 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 AMN1Q8IY45 258 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 RPRMLQ8N4K4 120 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 TMEM52Q8NDY8 209 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 IGLV3-16A0A075B6K0 115 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 CENPVL3A0A0U1RRI6 287 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 NPIPB5A8MRT5 1133 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 C17orf100A8MU93 164 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 ORMDL1Q9P0S3 153 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 LRP5O75197 1615 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 LTBP4Q8N2S1 1624 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 MARF1Q9Y4F3 1742 aaKnown RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 A0A1W2PQF6 199 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 H0YL77 283 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 LYZL4Q96KX0 146 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 OSTCQ9NRP0 149 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 USP9XQ93008 2570 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 A0A1W2PPC1 479 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 PLA2G1BP04054 148 aaKnown RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 RPL39P5Q59GN2 51 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 BCL6BQ8N143 479 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 LIME1Q9H400 295 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 PTPRSQ13332 1948 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 SCO2A0A1W2PP80 73 aa4.99□□□□□ -1.61
SCN1A-212ENST00000636194 RNASE2P10153 161 aaKnown RBP4.99□□□□□ -1.61
SCN1A-212ENST00000636194 CDKN1BP46527 198 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 C14orf177Q52M58 125 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 FBLN5Q9UBX5 448 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 IGKV2D-24A0A075B6R9 120 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 TINCRA0A1B0GVN0 87 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 A8MWP6 167 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 ANGP03950 147 aaKnown RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 ZNF474Q6S9Z5 364 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 PRSS41Q7RTY9 318 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 ZNF250P15622 560 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 CDKN1AP38936 164 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 CCL18P55774 89 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 GPHB5Q86YW7 130 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 REPIN1Q9BWE0 567 aaKnown RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 IGHV4OR15-8A0A075B7B6 117 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 A0A087WW49 117 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 A0A1W2PRE2 83 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 TBX6O95947 436 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 IGHV2-70P01814 119 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 HERVK_113P63121 156 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 TFF2Q03403 129 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 ETDBQ3ZM63 59 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 C8orf82Q6P1X6 216 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 APCDD1LQ8NCL9 501 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 WFDC12Q8WWY7 111 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 VPREB1P12018 145 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 LINC01545Q5VT33 79 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 LYPD1Q8N2G4 141 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 RFNGQ9Y644 331 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 TRBV5-5A0A0J9YX44 114 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 YPEL1O60688 119 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 TCF15Q12870 199 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 Q96M66 194 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 YPEL2Q96QA6 119 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 PSG8Q9UQ74 426 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 CRYGCP07315 174 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 FAM181AQ8N9Y4 354 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 VSIG2Q96IQ7 327 aa4.98□□□□□ -1.61
SCN1A-212ENST00000636194 MBNL3Q9NUK0 354 aaKnown RBP4.98□□□□□ -1.61
SCN1A-212ENST00000636194 GLI3P10071 1580 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 IGHV3OR16-8A0A075B7F1 116 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 BUB3O43684 328 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 INSL4Q14641 139 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 LINC01620Q4KN68 170 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 CFHR4Q92496 578 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 UBE2E1P51965 193 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 HIGD2BQ4VC39 106 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 NHSQ6T4R5 1651 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 FOXL1Q12952 345 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 HEPN1Q6WQI6 88 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 PPDPFLQ8WWR9 84 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 SCRT1Q9BWW7 348 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 MRPS18BQ9Y676 258 aaKnown RBP4.97□□□□□ -1.61
SCN1A-212ENST00000636194 V9GYY9 64 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 ETV2O00321 342 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-212ENST00000636194 SERF1AO75920 110 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 CFPP27918 469 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 CRYBA4P53673 196 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 PSG3Q16557 428 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 M0R1W7 72 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 C1orf194Q5T5A4 169 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 DEFB125Q8N687 156 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 LINC01555Q8NAE3 123 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 RNASE7Q9H1E1 156 aaKnown RBP4.97□□□□□ -1.61
SCN1A-212ENST00000636194 AZU1P20160 251 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 NREPQ16612 68 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 SRSF8Q9BRL6 282 aaKnown RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms