RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FAM223AQ8IWN6 122 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 TXN2Q99757 166 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 C20orf144Q9BQM9 153 aa10.99□□□□□ -0.65
CLN3-242ENST00000635958 IGHV3-21A0A0B4J1V1 117 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 SCO2A0A1W2PP80 73 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 ADMP35318 185 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 MFAP4P55083 255 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 SLC35B1P78383 322 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 STPG3Q8N7X2 389 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 RNF152Q8N8N0 203 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 USMG5Q96IX5 58 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 ATP6V0BQ99437 205 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 C21orf62Q9NYP8 219 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 IGKV1D-37A0A075B6S9 117 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 F8W735 103 aaPredicted RBP10.98□□□□□ -0.65
CLN3-242ENST00000635958 TRGV3P03979 118 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 ELANEP08246 267 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 RAB9AP51151 201 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 FOXE3Q13461 319 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 C15orf32Q32M92 178 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 GCSAMLQ5JQS6 135 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 ZNF329Q86UD4 541 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 ZNF502Q8TBZ5 544 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 MRPL32Q9BYC8 188 aaKnown RBP10.98□□□□□ -0.65
CLN3-242ENST00000635958 MRPL18Q9H0U6 180 aaKnown RBP10.98□□□□□ -0.65
CLN3-242ENST00000635958 KLK15Q9H2R5 256 aa10.98□□□□□ -0.65
CLN3-242ENST00000635958 PSMB11A5LHX3 300 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 HELTA6NFD8 242 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 TCAPO15273 167 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 PF4V1P10720 104 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 RAB4AP20338 218 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 ATP5G2Q06055 141 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 KRTAP21-3Q3LHN1 58 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 OR10J3Q5JRS4 329 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 WIPF2Q8TF74 440 aaPredicted RBP10.97□□□□□ -0.65
CLN3-242ENST00000635958 TRGV9Q99603 122 aa10.97□□□□□ -0.65
CLN3-242ENST00000635958 YTHDF2Q9Y5A9 579 aaKnown RBP10.97□□□□□ -0.65
CLN3-242ENST00000635958 TRBV20OR9-2A0A075B6H5 130 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 A0A1W2PRE2 83 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 ZNF705FA8MVS1 300 aaPredicted RBP10.96□□□□□ -0.65
CLN3-242ENST00000635958 OR5G3P0C626 314 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 IGLC1P0CG04 106 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 ZNF705DP0CH99 300 aaPredicted RBP10.96□□□□□ -0.65
CLN3-242ENST00000635958 ZNF705BP0CI00 300 aaPredicted RBP10.96□□□□□ -0.65
CLN3-242ENST00000635958 TIGITQ495A1 244 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 RASL11AQ6T310 242 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 LINC01006Q8NI28 216 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 MYOZ3Q8TDC0 251 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 NEU1Q99519 415 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 CHRDL1Q9BU40 450 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 DERL1Q9BUN8 251 aa10.96□□□□□ -0.65
CLN3-242ENST00000635958 TRAV30A0A087WSZ9 112 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 TRBV7-1A0A0A6YYK4 115 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 A0A0G2JLM5 398 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 ISLRO14498 428 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 GNG4P50150 75 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 TMEM183BQ1AE95 376 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 C10orf99Q6UWK7 81 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 TEX43Q6ZNM6 134 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 OR5AU1Q8NGC0 362 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 EEF1AKMT3Q96AZ1 226 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 JMJD1CQ15652 2540 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 TCRBV4S1A1TA0A5B7 111 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 IGKV1-17P01599 117 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 LINC00869P0C866 280 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 TMEM256Q8N2U0 113 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 MIEN1Q9BRT3 115 aa10.95□□□□□ -0.66
CLN3-242ENST00000635958 CTSGP08311 255 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 BAGE3Q86Y29 109 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 BAGE2Q86Y30 109 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 KLHDC1Q8N7A1 406 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 CCDC140Q96MF4 163 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 S4R3C0 116 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 V9GYV3 84 aa10.94□□□□□ -0.66
CLN3-242ENST00000635958 GNG7O60262 68 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 HLA-DQA1P01909 254 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 SEPSECSQ9HD40 501 aaKnown RBP10.93□□□□□ -0.66
CLN3-242ENST00000635958 CLEC3BP05452 202 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 C8orf88P0DMB2 117 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 Q56UQ5 140 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 LCNL1Q6ZST4 164 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 ZNF491Q8N8L2 437 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 TMEM190Q8WZ59 177 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 ZNF586Q9NXT0 402 aa10.93□□□□□ -0.66
CLN3-242ENST00000635958 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.92□□□□□ -0.66
CLN3-242ENST00000635958 K7EN84 100 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 IGHV3-23P01764 117 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 ZNF124Q15973 351 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 OR4B1Q8NGF8 309 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 UBE2E2Q96LR5 201 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 SNHG12Q9BXW3 62 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 SAMD10Q9BYL1 202 aa10.92□□□□□ -0.66
CLN3-242ENST00000635958 AURKAIP1Q9NWT8 199 aaPredicted RBP10.92□□□□□ -0.66
CLN3-242ENST00000635958 CLPSL1A2RUU4 121 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 PGPEP1LA6NFU8 196 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 OR2T8A6NH00 312 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 SNURFLB1AK76 121 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 SCGB2A1O75556 95 aa10.91□□□□□ -0.66
CLN3-242ENST00000635958 RPLP1P05386 114 aaKnown RBP10.91□□□□□ -0.66
CLN3-242ENST00000635958 FAM162BQ5T6X4 162 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms