RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MRPL18Q9H0U6 180 aaKnown RBP17.07■□□□□ 0.32
PNKP-220ENST00000627232 SMAD5-AS1Q9Y6J3 95 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 SPG11Q96JI7 2443 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 TRAV8-1A0A0A6YYK1 113 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 CLPSL1A2RUU4 121 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 BUB3O43684 328 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 FSHBP01225 129 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 TCL1AP56279 114 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 Q5PR19 223 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 C1orf194Q5T5A4 169 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 PRNTQ86SH4 94 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 RPP21Q9H633 154 aaKnown RBP17.06■□□□□ 0.32
PNKP-220ENST00000627232 NAT8BQ9UHF3 227 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 IGHV3-35A0A0C4DH35 117 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 FBLL1A6NHQ2 334 aaKnown RBP17.06■□□□□ 0.32
PNKP-220ENST00000627232 SNURFLB1AK76 121 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 CR1P17927 2039 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 DEFB112Q30KQ8 113 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 OR4B1Q8NGF8 309 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 DAZAP1Q96EP5 407 aaKnown RBP17.06■□□□□ 0.32
PNKP-220ENST00000627232 PSG8Q9UQ74 426 aa17.06■□□□□ 0.32
PNKP-220ENST00000627232 COL12A1Q99715 3063 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 CA1P00915 261 aaPredicted RBP17.05■□□□□ 0.32
PNKP-220ENST00000627232 P01737 135 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 TPPP2P59282 170 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 BLCAPP62952 87 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 PRSS57Q6UWY2 283 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 WIPF2Q8TF74 440 aaPredicted RBP17.05■□□□□ 0.32
PNKP-220ENST00000627232 METTL26Q96S19 204 aa17.05■□□□□ 0.32
PNKP-220ENST00000627232 A8MWL6 223 aa17.04■□□□□ 0.32
PNKP-220ENST00000627232 NPIPB6E9PJ23 425 aa17.04■□□□□ 0.32
PNKP-220ENST00000627232 LINC00322Q6ZN03 302 aaPredicted RBP17.04■□□□□ 0.32
PNKP-220ENST00000627232 TMEM136Q6ZRR5 245 aa17.04■□□□□ 0.32
PNKP-220ENST00000627232 C9orf139Q6ZV77 190 aa17.04■□□□□ 0.32
PNKP-220ENST00000627232 U3KQE9 123 aa17.04■□□□□ 0.32
PNKP-220ENST00000627232 M0R3E3 92 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 HLA-DQA1P01909 254 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 PDZD11Q5EBL8 140 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 GBGT1Q8N5D6 347 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 MAPK1IP1LQ8NDC0 245 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 NUP35Q8NFH5 326 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 OR5R1Q8NH85 324 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 NOL4LQ96MY1 436 aaPredicted RBP17.03■□□□□ 0.32
PNKP-220ENST00000627232 GFRA4Q9GZZ7 299 aa17.03■□□□□ 0.32
PNKP-220ENST00000627232 ZNF331Q9NQX6 463 aaPredicted RBP17.03■□□□□ 0.32
PNKP-220ENST00000627232 IGHV3OR16-8A0A075B7F1 116 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 FAM231BA6NCW3 169 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 IGLV1-40P01703 118 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 FRMD6-AS1P0C7T7 363 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 ARL3P36405 182 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 C16orf54Q6UWD8 224 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 CIARTQ8N365 385 aaPredicted RBP17.02■□□□□ 0.32
PNKP-220ENST00000627232 HIST1H2BLQ99880 126 aa17.02■□□□□ 0.32
PNKP-220ENST00000627232 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.01■□□□□ 0.31
PNKP-220ENST00000627232 ZNF785A8K8V0 405 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 SPINK4O60575 86 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 CFHR3Q02985 330 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 ATP5L2Q7Z4Y8 100 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 OR10D4PQ8NGN7 298 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 NEU1Q99519 415 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 IGHV4-59P01825 116 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 FABP4P15090 132 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 SLC35B1P78383 322 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 MRPL54Q6P161 138 aaKnown RBP17.01■□□□□ 0.31
PNKP-220ENST00000627232 Q6ZS46 218 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 SLC50A1Q9BRV3 221 aa17.01■□□□□ 0.31
PNKP-220ENST00000627232 FAM208BQ5VWN6 2430 aa17■□□□□ 0.31
PNKP-220ENST00000627232 A0A0G2JLM5 398 aa17■□□□□ 0.31
PNKP-220ENST00000627232 HIGD1CA8MV81 97 aa17■□□□□ 0.31
PNKP-220ENST00000627232 NDUFA4O00483 81 aa17■□□□□ 0.31
PNKP-220ENST00000627232 PF4V1P10720 104 aa17■□□□□ 0.31
PNKP-220ENST00000627232 ZC2HC1AQ96GY0 325 aa17■□□□□ 0.31
PNKP-220ENST00000627232 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.99■□□□□ 0.31
PNKP-220ENST00000627232 COX8CQ7Z4L0 72 aa16.99■□□□□ 0.31
PNKP-220ENST00000627232 Q96MF0 132 aa16.99■□□□□ 0.31
PNKP-220ENST00000627232 ANKRD17O75179 2603 aaKnown RBP16.99■□□□□ 0.31
PNKP-220ENST00000627232 CHEK1O14757 476 aa16.98■□□□□ 0.31
PNKP-220ENST00000627232 AMBPP02760 352 aa16.98■□□□□ 0.31
PNKP-220ENST00000627232 CRISP2P16562 243 aa16.98■□□□□ 0.31
PNKP-220ENST00000627232 PACRGQ96M98 296 aaPredicted RBP16.98■□□□□ 0.31
PNKP-220ENST00000627232 PRRC2AP48634 2157 aaKnown RBP16.98■□□□□ 0.31
PNKP-220ENST00000627232 ASH1LQ9NR48 2969 aaKnown RBP16.98■□□□□ 0.31
PNKP-220ENST00000627232 IGHG4P01861 327 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 RAB4BP61018 213 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 Q0VG73 95 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 SAPCD1Q5SSQ6 148 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 CYB5R2Q6BCY4 276 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 KRTAP1-3Q8IUG1 177 aa16.97■□□□□ 0.31
PNKP-220ENST00000627232 A0A1B0GXF2 115 aa16.96■□□□□ 0.31
PNKP-220ENST00000627232 TMEM89A2RUT3 159 aa16.96■□□□□ 0.31
PNKP-220ENST00000627232 FAM209BQ5JX69 171 aa16.96■□□□□ 0.31
PNKP-220ENST00000627232 Q6YL49 198 aa16.96■□□□□ 0.31
PNKP-220ENST00000627232 KLK15Q9H2R5 256 aa16.96■□□□□ 0.31
PNKP-220ENST00000627232 APOHP02749 345 aaPredicted RBP16.96■□□□□ 0.3
PNKP-220ENST00000627232 PLA2G2AP14555 144 aa16.96■□□□□ 0.3
PNKP-220ENST00000627232 RBPMS2Q6ZRY4 209 aaKnown RBP16.96■□□□□ 0.3
PNKP-220ENST00000627232 OR2D3Q8NGH3 330 aa16.96■□□□□ 0.3
PNKP-220ENST00000627232 GTSF1Q8WW33 167 aa16.96■□□□□ 0.3
PNKP-220ENST00000627232 TMEM18Q96B42 140 aa16.96■□□□□ 0.3
PNKP-220ENST00000627232 VPREB3Q9UKI3 123 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms