RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ODAMA1E959 279 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 SERPINA6P08185 405 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 VBP1P61758 197 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 RANP62826 216 aaKnown RBP-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 TPM4P67936 248 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 EIF3IQ13347 325 aaKnown RBP-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 TMED1Q13445 227 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 KRTAP19-7Q3SYF9 63 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 STAG3L4Q8TBR4 150 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 GLTPQ9NZD2 209 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 RFX7Q2KHR2 1363 aa-0.37□□□□□ -2.47
SCN1A-208ENST00000625916 USP9XQ93008 2570 aaPredicted RBP-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 ANKRD11Q6UB99 2663 aaPredicted RBP-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 MYH7BA7E2Y1 1941 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 ZGRF1Q86YA3 2104 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 MGAM2Q2M2H8 2515 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 CHD6Q8TD26 2715 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 LY6G6CO95867 125 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 OR10J4P0C629 311 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 OMPP47874 163 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 PIGPP57054 158 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 KRTAP19-6Q3LI70 58 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 EIF5AL1Q6IS14 154 aaKnown RBP-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 OR51A2Q8NGJ7 313 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 POP5Q969H6 163 aaKnown RBP-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 RMND5BQ96G75 393 aaPredicted RBP-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 UQCC1Q9NVA1 299 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 ABCA4P78363 2273 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 BCORL1Q5H9F3 1711 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 KDM6BO15054 1643 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 NCOA1Q15788 1441 aa-0.38□□□□□ -2.47
SCN1A-208ENST00000625916 SETXQ7Z333 2677 aaKnown RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 USP9YO00507 2555 aaPredicted RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 ABCA12Q86UK0 2595 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 ACACBO00763 2458 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 LAMA2P24043 3122 aaKnown RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 ZNF292O60281 2723 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 TRAV27A0A087WT01 109 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 KPNA3O00505 521 aaPredicted RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 PDE6DO43924 150 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 RAB5CP51148 216 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 RPL37AP61513 92 aaKnown RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 UBE2BP63146 152 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 SPINK13Q1W4C9 94 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 RRN3P1Q2M238 152 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 CASC2Q6XLA1 102 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 ARPINQ7Z6K5 226 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 S100A7AQ86SG5 101 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 OR5D16Q8NGK9 328 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 LLPHQ9BRT6 129 aaKnown RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 NPCDR1Q9BY65 106 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 TRIM4Q9C037 500 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 LPAR5Q9H1C0 372 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 RNASE7Q9H1E1 156 aaKnown RBP-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 ARL5AQ9Y689 179 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 CHD9Q3L8U1 2897 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 TGP01266 2768 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 PTPRFP10586 1907 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 PKD1L2Q7Z442 2459 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 FMN1Q68DA7 1419 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 OBSL1O75147 1896 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 KMT2AQ03164 3969 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 CELSR3Q9NYQ7 3312 aa-0.39□□□□□ -2.47
SCN1A-208ENST00000625916 FLNCQ14315 2725 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 ATRQ13535 2644 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 A0A087WUJ7 227 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 A0A096LPI6 279 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 FAM159BA6NKW6 160 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 CAV3P56539 151 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 LINC00299Q6ZSB3 139 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 LRRC18Q8N456 261 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 SCN8AQ9UQD0 1980 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 MGAMO43451 1857 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 PIK3C2GO75747 1445 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 WNK2Q9Y3S1 2297 aa-0.4□□□□□ -2.47
SCN1A-208ENST00000625916 EPG5Q9HCE0 2579 aa-0.41□□□□□ -2.47
SCN1A-208ENST00000625916 AKAP13Q12802 2813 aa-0.41□□□□□ -2.47
SCN1A-208ENST00000625916 PRORSD1PA6NEY8 169 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 TAX1BP3O14907 124 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 CST8O60676 142 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 GGCTO75223 188 aaKnown RBP-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 IGLV1-51P01701 117 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 HLA-EP13747 358 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 ERP29P30040 261 aaKnown RBP-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 ASB16-AS1Q495Z4 193 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 TMEM14EPQ6UXP3 125 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 ANGPTL5Q86XS5 388 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 C10orf111Q8N326 155 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 HYLS1Q96M11 299 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 LIMD2Q9BT23 127 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 KIFC1Q9BW19 673 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 PROK2Q9HC23 129 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 PRELID3BQ9Y3B1 194 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 ASXL3Q9C0F0 2248 aa-0.41□□□□□ -2.48
SCN1A-208ENST00000625916 NIPBLQ6KC79 2804 aaeCLIP-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 TRAV4A0A0B4J268 109 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 C9orf170A2RU37 121 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 SMIM23A6NLE4 172 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 TMEM256-PLSCR3K7ERE1 68 aa-0.42□□□□□ -2.48
SCN1A-208ENST00000625916 RPL37P61927 97 aaKnown RBP-0.42□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms