RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 TAS2R30P59541 319 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 RPP30P78346 268 aaKnown RBP4.11□□□□□ -1.75
CPNE3-208ENST00000614678 ERCC8Q13216 396 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 VWC2Q2TAL6 325 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 ZNF503Q96F45 646 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 UQCC1Q9NVA1 299 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 PXMP4Q9Y6I8 212 aa4.11□□□□□ -1.75
CPNE3-208ENST00000614678 SPP1P10451 314 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 HTN1P15515 57 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 AP2S1P53680 142 aaPredicted RBP4.1□□□□□ -1.75
CPNE3-208ENST00000614678 BLNKQ8WV28 456 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 NMES1Q9C002 83 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SH3BGRL3Q9H299 93 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SAV1Q9H4B6 383 aaPredicted RBP4.1□□□□□ -1.75
CPNE3-208ENST00000614678 A0A0J9YX75 114 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 CXorf65A6NEN9 183 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 NDUFB4O95168 129 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 HLA-DRB4P13762 266 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 BMI1P35226 326 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 APOC4P55056 127 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 Q6ZTC4 211 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 GRAMD2BQ96HH9 432 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SLC39A9Q9NUM3 307 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 HLA-DRB4X5D2U9 266 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 C10orf113Q5VZT2 155 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SSX7Q7RTT5 188 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 LINC00469Q8N7U9 141 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 NARS2Q96I59 477 aaKnown RBP4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SLC25A2Q9BXI2 301 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 PKHD1P08F94 4074 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 MUC4Q99102 2169 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 COX7A2P2O60397 106 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 IGLC2P0DOY2 106 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 DEFA1P59665 94 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 DEFA3P59666 94 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 PLP1P60201 277 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 RAP2BP61225 183 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 SAT2Q96F10 170 aaPredicted RBP4.1□□□□□ -1.75
CPNE3-208ENST00000614678 FAM167A-AS1Q96KT0 104 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 MFFQ9GZY8 342 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 TMEM231Q9H6L2 316 aa4.1□□□□□ -1.75
CPNE3-208ENST00000614678 ALMS1Q8TCU4 4167 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 KIR2DL5BA0A0G2JN68 375 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 KIR2DL5BA0A0G2JPC4 375 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 ZNF705GA8MUZ8 300 aaPredicted RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 RPL12P30050 165 aaKnown RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 ATP5IP56385 69 aaPredicted RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 SNRPD3P62318 126 aaKnown RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 HIST1H1AQ02539 215 aaPredicted RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 KIR2DL5AQ8N109 375 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 RPP25LQ8N5L8 163 aaKnown RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 ZNF738Q8NE65 137 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 KIR2DL5BQ8NHK3 375 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 SGK494Q96LW2 274 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 WDR61Q9GZS3 305 aaKnown RBP4.09□□□□□ -1.75
CPNE3-208ENST00000614678 M6PRP20645 277 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 OR11H4Q8NGC9 324 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 DNAJC4Q9NNZ3 241 aa4.09□□□□□ -1.75
CPNE3-208ENST00000614678 E5RGE8 158 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 S100A11P31949 105 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 FAM122CQ6P4D5 195 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 STX12Q86Y82 276 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 HSD17B11Q8NBQ5 300 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 PHYHIPLQ96FC7 376 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 ZNF331Q9NQX6 463 aaPredicted RBP4.09□□□□□ -1.76
CPNE3-208ENST00000614678 CACFD1Q9UGQ2 172 aa4.09□□□□□ -1.76
CPNE3-208ENST00000614678 IGKV2-40A0A087WW87 121 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 RNF222A6NCQ9 220 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 ISLRO14498 428 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PRAF2O60831 178 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PTTG1O95997 202 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 IGKV2D-40P01614 121 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 GALR1P47211 349 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 RAB2AP61019 212 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 C1orf194Q5T5A4 169 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PRR9Q5T870 116 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 FAT2Q9NYQ8 4349 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 C3orf84H3BNL1 204 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 ATF4P18848 351 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 ZNF546Q86UE3 836 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 Q8TAT8 98 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PHLDA1Q8WV24 401 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 MED28Q9H204 178 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 TRAV2A0A0B4J234 112 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 ZNF705EA8MWA4 302 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 SCGB2A1O75556 95 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PVALBP20472 110 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 RPL29P47914 159 aaKnown RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 PSMB3P49720 205 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 C12orf74Q32Q52 190 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 RPUSD4Q96CM3 377 aaKnown RBP4.08□□□□□ -1.76
CPNE3-208ENST00000614678 VGLL1Q99990 258 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 HSPB11Q9Y547 144 aa4.08□□□□□ -1.76
CPNE3-208ENST00000614678 ZNF705AQ6ZN79 300 aaPredicted RBP4.07□□□□□ -1.76
CPNE3-208ENST00000614678 FOXI2Q6ZQN5 318 aa4.07□□□□□ -1.76
CPNE3-208ENST00000614678 C11orf45Q8TAV5 145 aa4.07□□□□□ -1.76
CPNE3-208ENST00000614678 FXYD6-FXYD2A0A087WZ82 144 aa4.07□□□□□ -1.76
CPNE3-208ENST00000614678 PLAC8L1A1L4L8 177 aa4.07□□□□□ -1.76
CPNE3-208ENST00000614678 CT45A10P0DMU9 189 aa4.07□□□□□ -1.76
CPNE3-208ENST00000614678 PSG3Q16557 428 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms