RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NDUFA5Q16718 116 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 KIR2DL5AQ8N109 375 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 HSD17B11Q8NBQ5 300 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 KIR2DL5BQ8NHK3 375 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 ZMAT4Q9H898 229 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 TRAV8-2A0A0B4J237 113 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 SNRPCP09234 159 aaKnown RBP12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 IGLC2P0DOY2 106 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 RAB14P61106 215 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 ACTL10Q5JWF8 245 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 SPATA31B1PQ5VZV4 182 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 RPL7L1Q6DKI1 246 aaKnown RBP12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 ALKAL2Q6UX46 152 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 STHQ8IWL8 128 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 BAP18Q8IXM2 172 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 C20orf173Q96LM9 149 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 SPATA25Q9BR10 227 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 CYTL1Q9NRR1 136 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 NBEAL2Q6ZNJ1 2754 aa12.18□□□□□ -0.46
CCDC28A-202ENST00000611852 TENM3Q9P273 2699 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 H3BQ15 152 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 IGFL4Q6B9Z1 124 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 EIF5AL1Q6IS14 154 aaKnown RBP12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 MIR17HGQ75NE6 70 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 TRPT1Q86TN4 253 aaKnown RBP12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 MRPL32Q9BYC8 188 aaKnown RBP12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 HRH4Q9H3N8 390 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 TMEM14CQ9P0S9 112 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 FUT9Q9Y231 359 aa12.17□□□□□ -0.46
CCDC28A-202ENST00000611852 ATP6V0CP27449 155 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 DEFB1P60022 68 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 LCN15Q6UWW0 184 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 RNF182Q8N6D2 247 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 FAM167A-AS1Q96KT0 104 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 PSMG3Q9BT73 122 aaPredicted RBP12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 SLC25A2Q9BXI2 301 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 CSTL1Q9H114 145 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 U3KQK5 164 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 H3BTX0 84 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 UBE2CO00762 179 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 GDF5OSQ5U4N7 250 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 FOXI2Q6ZQN5 318 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 OR2G3Q8NGZ4 309 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 LRRC20Q8TCA0 184 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 RCHY1Q96PM5 261 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 SAV1Q9H4B6 383 aaPredicted RBP12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 RETNQ9HD89 108 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 RPRMQ9NS64 109 aa12.16□□□□□ -0.46
CCDC28A-202ENST00000611852 H3BMM0 161 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 SLC17A3O00476 420 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 PYYP10082 97 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 HLA-DRB4P13762 266 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 M6PRP20645 277 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 RHOBP62745 196 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 GUK1Q16774 197 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 ACOT6Q3I5F7 207 aaPredicted RBP12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 Q6ZWC4 215 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 SAT2Q96F10 170 aaPredicted RBP12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 SLC50A1Q9BRV3 221 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 SH3BGRL3Q9H299 93 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 ZNF331Q9NQX6 463 aaPredicted RBP12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 ZNF586Q9NXT0 402 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 HLA-DRB4X5D2U9 266 aa12.15□□□□□ -0.46
CCDC28A-202ENST00000611852 STAB2Q8WWQ8 2551 aa12.14□□□□□ -0.47
CCDC28A-202ENST00000611852 F6UB75 175 aa12.14□□□□□ -0.47
CCDC28A-202ENST00000611852 HLA-DMBP28068 263 aa12.14□□□□□ -0.47
CCDC28A-202ENST00000611852 RAB2AP61019 212 aa12.14□□□□□ -0.47
CCDC28A-202ENST00000611852 CLLU1Q5K131 121 aa12.14□□□□□ -0.47
CCDC28A-202ENST00000611852 TRBV19A0A075B6N1 114 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 A0A0J9YX75 114 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 HIST1H1EP10412 219 aaKnown RBP12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 SERF2P84101 59 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 PSG3Q16557 428 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 DEFB135Q30KP9 77 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 TMED6Q8WW62 240 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 GNPNAT1Q96EK6 184 aaPredicted RBP12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 OR51M1Q9H341 326 aa12.13□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF253O75346 499 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 GIG44P09565 113 aaPredicted RBP12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 SPP1P10451 314 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 EBLN2Q6P2I7 272 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 MORN3Q6PF18 240 aaPredicted RBP12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 OR10G4Q8NGN3 311 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 OR10G9Q8NGN4 311 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 OR10G7Q8NGN6 311 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF503Q96F45 646 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 OVOL2Q9BRP0 275 aa12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 HUWE1Q7Z6Z7 4374 aaKnown RBP12.12□□□□□ -0.47
CCDC28A-202ENST00000611852 CA1P00915 261 aaPredicted RBP12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF738Q8NE65 137 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 CLUHP3Q96NS8 147 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 PAXXQ9BUH6 204 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 TP53TG1Q9Y2A0 90 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 A0A1W2PPV4 95 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 OR7C2O60412 319 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 EIF3GO75821 320 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 NDUFB4O95168 129 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 OR10J4P0C629 311 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 TAS2R45P59539 299 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 PDE6HQ13956 83 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms