RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	GAGE12B	A1L429	117 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	ISLR	O14498	428 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	HSBP1	O75506	76 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	FAM106CP	P0CH98	169 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	DEFA4	P12838	97 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	IGLL1	P15814	213 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	GCSAML	Q5JQS6	135 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	KLF17	Q5JT82	389 aa	Predicted RBP	12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318		Q5PR19	223 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	MIC13	Q5XKP0	118 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318		Q6ZVH6	145 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318		Q8N9W7	124 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	LINC01356	Q8N9X3	169 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	MAPK1IP1L	Q8NDC0	245 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	SSMEM1	Q8WWF3	244 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	SRSF8	Q9BRL6	282 aa	Known RBP	12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	RNF223	E7ERA6	249 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	CRX	O43186	299 aa	Predicted RBP	12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	GATA3	P23771	443 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	BMI1	P35226	326 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	NDP	Q00604	133 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	FXYD3	Q14802	87 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	BVES-AS1	Q5T3Y7	98 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	MRPL54	Q6P161	138 aa	Known RBP	12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	OR2T6	Q8NHC8	308 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	RNF24	Q9Y225	148 aa		12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	F11R	Q9Y624	299 aa	Known RBP	12.15	□□□□□ -0.46
DDX39A-209	ENST00000589318	SMIM27	A0A1W2PRY6	76 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	IZUMO1R	A6ND01	250 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	NCBP2L	A6PVI3	153 aa	Known RBP	12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	CNIH1	O95406	144 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	GNG4	P50150	75 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRR20E	P86478	221 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRR20C	P86479	221 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRR20D	P86480	221 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRR20B	P86481	221 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRR20A	P86496	221 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	ZNF562	Q6V9R5	426 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	PIFO	Q8TCI5	191 aa		12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	ZNF331	Q9NQX6	463 aa	Predicted RBP	12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	MRPL36	Q9P0J6	103 aa	Known RBP	12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	GCN1	Q92616	2671 aa	Known RBP	12.14	□□□□□ -0.47
DDX39A-209	ENST00000589318	CRYGC	P07315	174 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	SCGB1A1	P11684	91 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	NTF3	P20783	257 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	GCHFR	P30047	84 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	TIGIT	Q495A1	244 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	SLC25A34	Q6PIV7	304 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	GTF2H5	Q6ZYL4	71 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	C18orf32	Q8TCD1	76 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	PMCHL2	Q9BQD1	86 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	MEGF9	Q9H1U4	602 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	SOX21	Q9Y651	276 aa	Predicted RBP	12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318		M0R2Z0	102 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	ASPHD1	Q5U4P2	390 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	STPG3	Q8N7X2	389 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	TMEM70	Q9BUB7	260 aa		12.13	□□□□□ -0.47
DDX39A-209	ENST00000589318	ZNF469	Q96JG9	3925 aa	Predicted RBP	12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	PDZD2	O15018	2839 aa		12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	IGHV3-48	P01763	117 aa		12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	MPV17L2	Q567V2	206 aa		12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	AMMECR1L	Q6DCA0	310 aa		12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	MS4A6A	Q9H2W1	248 aa		12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	YTHDF2	Q9Y5A9	579 aa	Known RBP	12.12	□□□□□ -0.47
DDX39A-209	ENST00000589318	IGKV1D-37	A0A075B6S9	117 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	IGHV7-81	A0A0B4J1V7	117 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	HELT	A6NFD8	242 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	IGHV4-31	P0DP07	118 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	CRYBB3	P26998	211 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	HIST1H1A	Q02539	215 aa	Predicted RBP	12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	RAB31	Q13636	194 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRSS57	Q6UWY2	283 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	ARPC1A	Q92747	370 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	TMEM167B	Q9NRX6	74 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	CSPG4	Q6UVK1	2322 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	PRRC2A	P48634	2157 aa	Known RBP	12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	C2orf70	A6NJV1	201 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	IGLC1	P0CG04	106 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	EGR2	P11161	476 aa	Predicted RBP	12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318		Q56UQ5	140 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	ATOH7	Q8N100	152 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	FAM19A2	Q8N3H0	131 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	NPIPB3	Q92617	1050 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318		Q96MF0	132 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	SLC25A33	Q9BSK2	321 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318	CHRDL1	Q9BU40	450 aa		12.11	□□□□□ -0.47
DDX39A-209	ENST00000589318		G3V4G9	280 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	OR2J3	O76001	311 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	NUDT3	O95989	172 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	SEC11A	P67812	179 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	PSG9	Q00887	426 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	MAJIN	Q3KP22	176 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	THAP8	Q8NA92	274 aa		12.1	□□□□□ -0.47
DDX39A-209	ENST00000589318	CREBBP	Q92793	2442 aa		12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	OR2T8	A6NH00	312 aa		12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	TGFA	P01135	160 aa		12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	GATA2	P23769	480 aa	Predicted RBP	12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	KIAA1644	Q3SXP7	199 aa		12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	CENPW	Q5EE01	88 aa		12.09	□□□□□ -0.47
DDX39A-209	ENST00000589318	LCN12	Q6JVE5	192 aa		12.09	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms