RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 OR2H2O95918 312 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 NRASP01111 189 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 APOA2P02652 100 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 C1QAP02745 245 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 ZNF728P0DKX0 622 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 LINC00694P0DN24 101 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 S100A11P31949 105 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 GABRA3P34903 492 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 SRP14P37108 136 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 RPS25P62851 125 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 ADIGQ0VDE8 80 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 RHEBQ15382 184 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 NEDD8Q15843 81 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 UBE2NLQ5JXB2 153 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 AMMECR1LQ6DCA0 310 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 LAIR2Q6ISS4 152 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 H2AFVQ71UI9 128 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 BAP18Q8IXM2 172 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 C3orf22Q8N5N4 141 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 OR5A1Q8NGJ0 315 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 OR4C16Q8NGL9 310 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 OR1J4Q8NGS1 313 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 MRPL30Q8TCC3 161 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 C2orf15Q8WU43 125 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 SLAMF6Q96DU3 332 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 TEX37Q96LM6 180 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 YPEL4Q96NS1 127 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 DERL3Q96Q80 235 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 OR2A5Q96R48 311 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 TCEAL7Q9BRU2 100 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 PBDC1Q9BVG4 233 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 RTL8AQ9BWD3 113 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 SMIM3Q9BZL3 60 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 WDR61Q9GZS3 305 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 TAF9BQ9HBM6 251 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 ZNF286AQ9HBT8 521 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 OR5AC2Q9NZP5 309 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 NUFIP1Q9UHK0 495 aaKnown RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 PCTPQ9UKL6 214 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 U3KQK5 164 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 TET2Q6N021 2002 aaPredicted RBP2.03□□□□□ -2.08
VPS35-209ENST00000568642 SCN3AQ9NY46 2000 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 MYH11P35749 1972 aa2.03□□□□□ -2.08
VPS35-209ENST00000568642 IGKV1-9A0A0C4DH69 117 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 A0A0X1KG70 313 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 PVALEFA0A1B0GWK0 134 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 ARRDC5A6NEK1 342 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 GABARAPH6UMI1 98 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 PLA2G10O15496 165 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 TPST1O60507 370 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 ZNF324O75467 553 aaPredicted RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 NDUFC2O95298 119 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 IGLV3-25P01717 112 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 HLA-DQB1P01920 261 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 HSPB1P04792 205 aaKnown RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 S100A8P05109 93 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 CFC1P0CG37 223 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 SMIM17P0DL12 118 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 RPL35P42766 123 aaKnown RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 DIO3P55073 304 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 GNB2P62879 340 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 SELENOWP63302 87 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 TMEM183BQ1AE95 376 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 AWAT2Q6E213 333 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 RASL11AQ6T310 242 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 GLIPR1L1Q6UWM5 242 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 MOB1BQ7L9L4 216 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 TMEM183AQ8IXX5 376 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 PACRGLQ8N7B6 248 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 OR4E2Q8NGC2 313 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 CIRBP-AS1Q8TBR5 109 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 TWIST2Q8WVJ9 160 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 TMEM106AQ96A25 262 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 MALSU1Q96EH3 234 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 BORCS8Q96FH0 119 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 SDF2Q99470 211 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 KLF6Q99612 283 aaPredicted RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 PYGO2Q9BRQ0 406 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 FGFBP2Q9BYJ0 223 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 KRTAP4-3Q9BYR4 195 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 OR2J1Q9GZK6 312 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 EIF5A2Q9GZV4 153 aaKnown RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 AICDAQ9GZX7 198 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 HEXA-AS1Q9H8Q6 139 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 ZNF586Q9NXT0 402 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 MED11Q9P086 117 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 KLK5Q9Y337 293 aaPredicted RBP2.02□□□□□ -2.09
VPS35-209ENST00000568642 FIS1Q9Y3D6 152 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 ARFGEF3Q5TH69 2177 aa2.02□□□□□ -2.09
VPS35-209ENST00000568642 FAM92AA1XBS5 289 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 IGLL5B9A064 214 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 F6UZH7 168 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 K7ERU9 68 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 CORTO00230 105 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 PIRO00625 290 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 GABARAPO95166 117 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 MT-ND4LP03901 98 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 HLA-DPB1P04440 258 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 HLA-DQB2P05538 268 aa2.01□□□□□ -2.09
VPS35-209ENST00000568642 DBIP07108 87 aaKnown RBP2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms