RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CBLN4Q9NTU7 201 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CNTLNQ9NXG0 1405 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 OR5AC2Q9NZP5 309 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 BAIAP2Q9UQB8 552 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CCL26Q9Y258 94 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 HS3ST2Q9Y278 367 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 HSPE1-MOB4S4R3N1 261 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 ABCA4P78363 2273 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CUL7Q14999 1698 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 IBTKQ9P2D0 1353 aaPredicted RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 MYOFQ9NZM1 2061 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 HELZP42694 1942 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 ALPK3Q96L96 1907 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 GRIN2AQ12879 1464 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 DSPPQ9NZW4 1301 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 SYNJ1O43426 1573 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 MCM3APO60318 1980 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 DISP2A7MBM2 1401 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 KDM6AO15550 1401 aaPredicted RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 ARHGAP31Q2M1Z3 1444 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 FAM135BQ49AJ0 1406 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 IGHV3-73A0A0B4J1V6 119 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 A0A0J9YW62 118 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 A0A1W2PQD3 144 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 FAM92AA1XBS5 289 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 C9orf170A2RU37 121 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 H3BT86 120 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TXNDC9O14530 226 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TP53I11O14683 189 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 SLC22A1O15245 554 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 NDUFB3O43676 98 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 HIST1H2BKO60814 126 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 HIST1H2BJP06899 126 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 MSMBP08118 114 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 PAEPP09466 180 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TSPAN19P0C672 248 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 IGLC6P0CF74 106 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 SMIM6P0DI80 62 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 ZNF728P0DKX0 622 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 LINC00694P0DN24 101 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 GZMBP10144 247 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 ZNF25P17030 456 aaPredicted RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 CD24P25063 80 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 RPL35P42766 123 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 RPL28P46779 137 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 EIF2B2P49770 351 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 ARPP19P56211 112 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 NDUFA6P56556 154 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 KRTAP10-4P60372 401 aaPredicted RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 MAXP61244 160 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 SUPT4H1P63272 117 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 SELENOWP63302 87 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 HBBP68871 147 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 ZNF117Q03924 483 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 OCIAD2Q56VL3 154 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 TMEM244Q5VVB8 128 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 HAGHLQ6PII5 290 aaPredicted RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 SOSTDC1Q6X4U4 206 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 C7orf65Q6ZTY9 151 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 LINC00305Q7Z4B0 112 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TEX29Q8N6K0 151 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 OR4E2Q8NGC2 313 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 OR10P1Q8NGE3 313 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 OR5A2Q8NGI9 324 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 PFN4Q8NHR9 129 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 BRK1Q8WUW1 75 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 NAT14Q8WUY8 206 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 FGF13Q92913 245 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 MAGOHBQ96A72 148 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 TP53RKQ96S44 253 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 IMMP2LQ96T52 175 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 GINS4Q9BRT9 223 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TCEAL7Q9BRU2 100 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 BANF2Q9H503 90 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 NAT8Q9UHE5 227 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 GNG8Q9UK08 70 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 EPDR1Q9UM22 224 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 TNFSF18Q9UNG2 199 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 HEY1Q9Y5J3 304 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 AKAP11Q9UKA4 1901 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 DLC1Q96QB1 1528 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 NISCHQ9Y2I1 1504 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 ALPK2Q86TB3 2170 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 INTS1Q8N201 2190 aaKnown RBP0.67□□□□□ -2.3
VPS35-207ENST00000568191 AKAP12Q02952 1782 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 STRCQ7RTU9 1775 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 KIDINS220Q9ULH0 1771 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 MBD5Q9P267 1494 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 PRDM2Q13029 1718 aa0.67□□□□□ -2.3
VPS35-207ENST00000568191 EML5Q05BV3 1969 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 RIC1Q4ADV7 1423 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 VPS8Q8N3P4 1428 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 CR1P17927 2039 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 ZDBF2Q9HCK1 2354 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 IGLV3-9A0A075B6K5 115 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TRAV7A0A075B6U4 112 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TRGV10A0A0A0MS01 117 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TRGV5A0A0B4J1U4 118 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TRAV13-1A0A0B4J241 112 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms