RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PSG3Q16557 428 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 DAZAP1Q96EP5 407 aaKnown RBP15.76■□□□□ 0.11
CLN3-230ENST00000568076 ZC2HC1AQ96GY0 325 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 CCDC140Q96MF4 163 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 SPOCK3Q9BQ16 436 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 RABAC1Q9UI14 185 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 PSG8Q9UQ74 426 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 SOX21Q9Y651 276 aaPredicted RBP15.76■□□□□ 0.11
CLN3-230ENST00000568076 SMAD5-AS1Q9Y6J3 95 aa15.76■□□□□ 0.11
CLN3-230ENST00000568076 UTP20O75691 2785 aaKnown RBP15.75■□□□□ 0.11
CLN3-230ENST00000568076 OR10J3Q5JRS4 329 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 MOB4Q9Y3A3 225 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 CACNA1BQ00975 2339 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 USP24Q9UPU5 2620 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 C16orf54Q6UWD8 224 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 TOMM20LQ6UXN7 152 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 ATP5L2Q7Z4Y8 100 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 NRGNQ92686 78 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 NOL4LQ96MY1 436 aaPredicted RBP15.75■□□□□ 0.11
CLN3-230ENST00000568076 MS4A10Q96PG2 267 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 RCHY1Q96PM5 261 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 ZFAND3Q9H8U3 227 aa15.75■□□□□ 0.11
CLN3-230ENST00000568076 RPL7P18124 248 aaKnown RBP15.74■□□□□ 0.11
CLN3-230ENST00000568076 COL8A1P27658 744 aa15.74■□□□□ 0.11
CLN3-230ENST00000568076 TPPP2P59282 170 aa15.74■□□□□ 0.11
CLN3-230ENST00000568076 PAFAH1B2P68402 229 aa15.74■□□□□ 0.11
CLN3-230ENST00000568076 SSBP4Q9BWG4 385 aaPredicted RBP15.74■□□□□ 0.11
CLN3-230ENST00000568076 MEGF9Q9H1U4 602 aa15.74■□□□□ 0.11
CLN3-230ENST00000568076 ZFP30Q9Y2G7 519 aa15.74■□□□□ 0.11
CLN3-230ENST00000568076 CAMPP49913 170 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 Q6ZWC4 215 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 GFRA4Q9GZZ7 299 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 PRO1933Q9H354 126 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 AAMDCQ9H7C9 122 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 CELSR2Q9HCU4 2923 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 K7EQM0 130 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 CD33P20138 364 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 C19orf54Q5BKX5 351 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 PGLYRP4Q96LB8 373 aa15.73■□□□□ 0.11
CLN3-230ENST00000568076 BBC3Q96PG8 261 aaPredicted RBP15.73■□□□□ 0.11
CLN3-230ENST00000568076 TRAV20A0A0B4J274 112 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 ZNF253O75346 499 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 CRIP1P50238 77 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 PKIAP61925 76 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 PRR31Q5SQ13 230 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 CLEC19AQ6UXS0 136 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 SPG11Q96JI7 2443 aa15.72■□□□□ 0.11
CLN3-230ENST00000568076 PSG9Q00887 426 aa15.71■□□□□ 0.11
CLN3-230ENST00000568076 ZNF664Q8N3J9 261 aa15.71■□□□□ 0.11
CLN3-230ENST00000568076 OR4B1Q8NGF8 309 aa15.71■□□□□ 0.11
CLN3-230ENST00000568076 LINC00527Q9UJ94 153 aa15.71■□□□□ 0.11
CLN3-230ENST00000568076 MSMBP08118 114 aa15.71■□□□□ 0.1
CLN3-230ENST00000568076 HBBP68871 147 aa15.71■□□□□ 0.1
CLN3-230ENST00000568076 CRYBG3Q68DQ2 2970 aa15.71■□□□□ 0.1
CLN3-230ENST00000568076 OR2D3Q8NGH3 330 aa15.71■□□□□ 0.1
CLN3-230ENST00000568076 CLPSL1A2RUU4 121 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 FAM231BA6NCW3 169 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 IGHG4P01861 327 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 IQCJQ1A5X6 159 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 RBPMS2Q6ZRY4 209 aaKnown RBP15.7■□□□□ 0.1
CLN3-230ENST00000568076 C18orf32Q8TCD1 76 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 EEF1AKMT3Q96AZ1 226 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 C8orf49Q96NF6 230 aa15.7■□□□□ 0.1
CLN3-230ENST00000568076 TRAV41A0A0B4J266 112 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 CRIP2P52943 208 aaPredicted RBP15.69■□□□□ 0.1
CLN3-230ENST00000568076 SAMD10Q9BYL1 202 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 IGKV2-40A0A087WW87 121 aaPredicted RBP15.69■□□□□ 0.1
CLN3-230ENST00000568076 A0A1W2PS18 150 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 SCGB1D1O95968 90 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 IGKV2D-40P01614 121 aaPredicted RBP15.69■□□□□ 0.1
CLN3-230ENST00000568076 GPX1P07203 203 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 IGFL4Q6B9Z1 124 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 KCNS1Q96KK3 526 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 MYO18BQ8IUG5 2567 aa15.69■□□□□ 0.1
CLN3-230ENST00000568076 TRBV7-1A0A0A6YYK4 115 aa15.68■□□□□ 0.1
CLN3-230ENST00000568076 BUB3O43684 328 aa15.68■□□□□ 0.1
CLN3-230ENST00000568076 PAX1P15863 534 aa15.68■□□□□ 0.1
CLN3-230ENST00000568076 HLA-DMBP28068 263 aa15.68■□□□□ 0.1
CLN3-230ENST00000568076 CSN1S1P47710 185 aa15.68■□□□□ 0.1
CLN3-230ENST00000568076 ALKBH7Q9BT30 221 aaPredicted RBP15.68■□□□□ 0.1
CLN3-230ENST00000568076 MAP1AP78559 2803 aaPredicted RBP15.68■□□□□ 0.1
CLN3-230ENST00000568076 TSTD3H0UI37 97 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 AVPP01185 164 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 APOHP02749 345 aaPredicted RBP15.67■□□□□ 0.1
CLN3-230ENST00000568076 FOXA3P55318 350 aaPredicted RBP15.67■□□□□ 0.1
CLN3-230ENST00000568076 LY6EQ16553 131 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 NAGKQ9UJ70 344 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 RNF114Q9Y508 228 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 ZFYVE26Q68DK2 2539 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 SERTM2A0A1B0GWG4 89 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 A8MWP6 167 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 CHEK1O14757 476 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 HIF1ANQ9NWT6 349 aa15.67■□□□□ 0.1
CLN3-230ENST00000568076 H3BUX3 64 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 ATP5G2Q06055 141 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 KLF5Q13887 457 aaPredicted RBP15.66■□□□□ 0.1
CLN3-230ENST00000568076 CSMD2Q7Z408 3487 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 IGHV3-66A0A0C4DH42 116 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 A6NDX4 124 aa15.66■□□□□ 0.1
CLN3-230ENST00000568076 ZNF705FA8MVS1 300 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms