RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR11H1Q8NG94 326 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 OR11H2Q8NH07 326 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 SGK494Q96LW2 274 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 TMEM70Q9BUB7 260 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 GFRA4Q9GZZ7 299 aa10.55□□□□□ -0.72
VPS4A-204ENST00000566354 HELZ2Q9BYK8 2649 aaKnown RBP10.54□□□□□ -0.72
VPS4A-204ENST00000566354 SPG11Q96JI7 2443 aa10.54□□□□□ -0.72
VPS4A-204ENST00000566354 IGLC7A0M8Q6 106 aa10.54□□□□□ -0.72
VPS4A-204ENST00000566354 MRGPRG-AS1Q2M3A8 158 aa10.54□□□□□ -0.72
VPS4A-204ENST00000566354 CHCHD1Q96BP2 118 aaKnown RBP10.54□□□□□ -0.72
VPS4A-204ENST00000566354 TPSG1Q9NRR2 321 aa10.54□□□□□ -0.72
VPS4A-204ENST00000566354 C19orf71A6NCJ1 209 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 FAM231BA6NCW3 169 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 TNFRSF13BO14836 293 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-204ENST00000566354 CRXO43186 299 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-204ENST00000566354 IGLL1P15814 213 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 PLP1P60201 277 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 HCP5Q6MZN7 132 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 SHISA2Q6UWI4 295 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 LINC00322Q6ZN03 302 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-204ENST00000566354 TEX45Q8NA69 505 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 CCL17Q92583 94 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 DAZAP1Q96EP5 407 aaKnown RBP10.53□□□□□ -0.72
VPS4A-204ENST00000566354 URB1-AS1Q96HZ7 61 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 NAV3Q8IVL0 2385 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 TCRAP04437 139 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 GP9P14770 177 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 C11orf71Q6IPW1 123 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 C8orf46Q8TAG6 207 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 GTSF1Q8WW33 167 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 RITA1Q96K30 269 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 UBTD1Q9HAC8 227 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 C1RLQ9NZP8 487 aa10.53□□□□□ -0.72
VPS4A-204ENST00000566354 ASH1LQ9NR48 2969 aaKnown RBP10.52□□□□□ -0.72
VPS4A-204ENST00000566354 A1L4Q6 167 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 LYNX1G3V0Z9 82 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 ENSAO43768 121 aaKnown RBP10.52□□□□□ -0.72
VPS4A-204ENST00000566354 LYNX1P0DP58 116 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 HINT1P49773 126 aaPredicted RBP10.52□□□□□ -0.72
VPS4A-204ENST00000566354 DLX6P56179 175 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 RUSC1-AS1Q66K80 236 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 LYPD2Q6UXB3 125 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 RBPMS2Q6ZRY4 209 aaKnown RBP10.52□□□□□ -0.72
VPS4A-204ENST00000566354 Q9H3A6 140 aa10.52□□□□□ -0.72
VPS4A-204ENST00000566354 LY6HO94772 140 aa10.52□□□□□ -0.73
VPS4A-204ENST00000566354 RPL27AP46776 148 aaKnown RBP10.52□□□□□ -0.73
VPS4A-204ENST00000566354 PGLYRP4Q96LB8 373 aa10.52□□□□□ -0.73
VPS4A-204ENST00000566354 CELSR2Q9HCU4 2923 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 TSPAN13O95857 204 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 PPIAL4GP0DN37 164 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 TMEM155Q4W5P6 130 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 FAM120AOSQ5T036 256 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 KIR3DL3Q8N743 410 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 OR4F17Q8NGA8 305 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 NDFIP1Q9BT67 221 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 TNFRSF18Q9Y5U5 241 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 PPIAL4CA0A0B4J2A2 164 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 IGHV1-8P0DP01 117 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 FOXA3P55318 350 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-204ENST00000566354 VAMP3Q15836 100 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 DTX2Q86UW9 622 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 KAAG1Q9UBP8 84 aa10.51□□□□□ -0.73
VPS4A-204ENST00000566354 DOPEY2Q9Y3R5 2298 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 TRAV26-1A0A087WT03 109 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 OR4C46A6NHA9 309 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 NPIPB6E9PJ23 425 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 ST20Q9HBF5 79 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 OTORQ9NRC9 128 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 CTSZQ9UBR2 303 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 HIGD1AQ9Y241 93 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 IGHV3-72A0A0B4J1Y9 119 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 IGHV1-24A0A0C4DH33 117 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 SYS1-DBNDD2H3BUS1 97 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 LEPROTL1O95214 131 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 CRYGBP07316 175 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 OR5AL1P0C617 328 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 PF4V1P10720 104 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 RAB9AP51151 201 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 SPATA12Q7Z6I5 190 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 TMEM133Q9H2Q1 129 aa10.5□□□□□ -0.73
VPS4A-204ENST00000566354 LOC102724200A0A096LPH7 203 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-204ENST00000566354 CHEK1O14757 476 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 PLA2G2AP14555 144 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 TMEM14CQ9P0S9 112 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 SH2D7A6NKC9 451 aaPredicted RBP10.49□□□□□ -0.73
VPS4A-204ENST00000566354 COL8A1P27658 744 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 UNQ5815/PRO19632Q6UWF5 114 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 Q86TA4 180 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 TMEM190Q8WZ59 177 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 RAB1BQ9H0U4 201 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 SIGLEC9Q9Y336 463 aa10.49□□□□□ -0.73
VPS4A-204ENST00000566354 F11RQ9Y624 299 aaKnown RBP10.49□□□□□ -0.73
VPS4A-204ENST00000566354 H3BTX0 84 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 HAX1O00165 279 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 PLXNB1O43157 2135 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 NDUFS7O75251 213 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 RIPPLY3P57055 190 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 CKS1BP61024 79 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 SIGMAR1Q99720 223 aa10.48□□□□□ -0.73
VPS4A-204ENST00000566354 FBN2P35556 2912 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms