RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 DEFB114Q30KQ6 69 aa12.8□□□□□ -0.36
CMTM3-208ENST00000564247 MRPS12O15235 138 aaKnown RBP12.79□□□□□ -0.36
CMTM3-208ENST00000564247 NMBP08949 121 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 GP9P14770 177 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 CLLU1Q5K131 121 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 C9orf66Q5T8R8 295 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 PCNPQ8WW12 178 aaKnown RBP12.79□□□□□ -0.36
CMTM3-208ENST00000564247 ZNF503Q96F45 646 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 AURKAIP1Q9NWT8 199 aaPredicted RBP12.79□□□□□ -0.36
CMTM3-208ENST00000564247 SMAD5-AS1Q9Y6J3 95 aa12.79□□□□□ -0.36
CMTM3-208ENST00000564247 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 DNASE2O00115 360 aaPredicted RBP12.78□□□□□ -0.36
CMTM3-208ENST00000564247 EGFEM1PQ0D2K5 195 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 FAM90A2PQ658T7 463 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 OR2K2Q8NGT1 345 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 BLNKQ8WV28 456 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 FXYD5Q96DB9 178 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 TMPRSS5Q9H3S3 457 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 SELENOKQ9Y6D0 94 aa12.78□□□□□ -0.36
CMTM3-208ENST00000564247 IGKV3-7A0A075B6H7 116 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 A0A087X0K7 114 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 H3BQ15 152 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 IFNA1P01562 189 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 SNRPCP09234 159 aaKnown RBP12.77□□□□□ -0.37
CMTM3-208ENST00000564247 IGLC2P0DOY2 106 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 SAMD13Q5VXD3 122 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 LYPD6BQ8NI32 183 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 NRN1Q9NPD7 142 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 ZNF586Q9NXT0 402 aa12.77□□□□□ -0.37
CMTM3-208ENST00000564247 CCL20P78556 96 aa12.76□□□□□ -0.37
CMTM3-208ENST00000564247 PSG9Q00887 426 aa12.76□□□□□ -0.37
CMTM3-208ENST00000564247 PDE6HQ13956 83 aa12.76□□□□□ -0.37
CMTM3-208ENST00000564247 CD300EQ496F6 205 aaPredicted RBP12.76□□□□□ -0.37
CMTM3-208ENST00000564247 SUN5Q8TC36 379 aa12.76□□□□□ -0.37
CMTM3-208ENST00000564247 GNG13Q9P2W3 67 aa12.76□□□□□ -0.37
CMTM3-208ENST00000564247 TRBV19A0A075B6N1 114 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 H3BTX0 84 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 TSPAN4O14817 238 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 IGLV1-51P01701 117 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 KRTAP10-11P60412 298 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 PMS2P11Q13670 270 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 WFDC3Q8IUB2 231 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 GBGT1Q8N5D6 347 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 MRAPQ8TCY5 172 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 C16orf92Q96LL3 132 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 MS4A6AQ9H2W1 248 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 MANBALQ9NQG1 85 aa12.75□□□□□ -0.37
CMTM3-208ENST00000564247 ZNF253O75346 499 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 TAGLN2P37802 199 aaKnown RBP12.74□□□□□ -0.37
CMTM3-208ENST00000564247 ID1P41134 155 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 RANP62826 216 aaKnown RBP12.74□□□□□ -0.37
CMTM3-208ENST00000564247 LCN12Q6JVE5 192 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 TMEM61Q8N0U2 210 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 LYPD1Q8N2G4 141 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 C17orf77Q96MU5 243 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 SLC50A1Q9BRV3 221 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 NKX6-2Q9C056 277 aaPredicted RBP12.74□□□□□ -0.37
CMTM3-208ENST00000564247 AAMDCQ9H7C9 122 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 CLEC5AQ9NY25 188 aa12.74□□□□□ -0.37
CMTM3-208ENST00000564247 TRAV2A0A0B4J234 112 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 A0A1W2PRE2 83 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 OR4C46A6NHA9 309 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 TFPI2P48307 235 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 UBE2G2P60604 165 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 GUCA2BQ16661 112 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 CST9LP1Q5W188 147 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 SPAG8Q99932 426 aaPredicted RBP12.73□□□□□ -0.37
CMTM3-208ENST00000564247 ZMAT5Q9UDW3 170 aaKnown RBP12.73□□□□□ -0.37
CMTM3-208ENST00000564247 ARL2-SNX15V9GYD0 113 aa12.73□□□□□ -0.37
CMTM3-208ENST00000564247 PAGE4O60829 102 aa12.72□□□□□ -0.37
CMTM3-208ENST00000564247 OTORQ9NRC9 128 aa12.72□□□□□ -0.37
CMTM3-208ENST00000564247 PGPA6NDG6 321 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 RBFOX3A6NFN3 312 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 FAM74A7A6NL05 159 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 K7EIL1 84 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 ISLRO14498 428 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 NDUFB4O95168 129 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 SNRPD3P62318 126 aaKnown RBP12.71□□□□□ -0.37
CMTM3-208ENST00000564247 HAGHQ16775 308 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 TXNDC17Q9BRA2 123 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 EIF5A2Q9GZV4 153 aaKnown RBP12.71□□□□□ -0.37
CMTM3-208ENST00000564247 Q9H3A6 140 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 ZNF331Q9NQX6 463 aaPredicted RBP12.71□□□□□ -0.37
CMTM3-208ENST00000564247 PRELID1Q9Y255 219 aa12.71□□□□□ -0.37
CMTM3-208ENST00000564247 IZUMO1RA6ND01 250 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 K7EQG2 157 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 CSN1S1P47710 185 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 CMC4P56277 68 aaPredicted RBP12.7□□□□□ -0.38
CMTM3-208ENST00000564247 SUMO1P63165 101 aaKnown RBP12.7□□□□□ -0.38
CMTM3-208ENST00000564247 ICAM4Q14773 271 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 CMTM2Q8TAZ6 248 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 DCANP1Q8TF63 244 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 LINC00052Q96N35 136 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 VAX2Q9UIW0 290 aa12.7□□□□□ -0.38
CMTM3-208ENST00000564247 SLC17A3O00476 420 aa12.69□□□□□ -0.38
CMTM3-208ENST00000564247 BCL2P10415 239 aa12.69□□□□□ -0.38
CMTM3-208ENST00000564247 PSG3Q16557 428 aa12.69□□□□□ -0.38
CMTM3-208ENST00000564247 EXOC3-AS1Q8N2X6 119 aa12.69□□□□□ -0.38
CMTM3-208ENST00000564247 RXFP4Q8TDU9 374 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms