RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 C1orf159Q96HA4 380 aa7.28□□□□□ -1.24
VPS39-205ENST00000562258 SLC17A3O00476 420 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 FOLR2P14207 255 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 PNRC1Q12796 327 aaPredicted RBP7.27□□□□□ -1.24
VPS39-205ENST00000562258 C10orf99Q6UWK7 81 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 CLRN3Q8NCR9 226 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 LY6G5BQ8NDX9 201 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 DEFB104AQ8WTQ1 72 aa7.27□□□□□ -1.24
VPS39-205ENST00000562258 CFAP47Q6ZTR5 3102 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 KIAA1644Q3SXP7 199 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 ODF3L1Q8IXM7 274 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 HIST1H2BAQ96A08 127 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 C5orf30Q96GV9 206 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 USP34Q70CQ2 3546 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 NBEAL1Q6ZS30 2694 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 ZNF253O75346 499 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 CGB3P0DN86 165 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 CGB7P0DN87 165 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 FCER1GP30273 86 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 PAX9P55771 341 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 TMEM183BQ1AE95 376 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 TMEM183AQ8IXX5 376 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 NRN1Q9NPD7 142 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 IGHV3-53P01767 116 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 DEFB130BP0DP73 79 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 DEFB130AP0DP74 79 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 PRR31Q5SQ13 230 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 VN1R17PQ8TDU5 208 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 AJUBAQ96IF1 538 aa7.27□□□□□ -1.25
VPS39-205ENST00000562258 SYT8Q8NBV8 401 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 PSG8Q9UQ74 426 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 DUSP14O95147 198 aaKnown RBP7.26□□□□□ -1.25
VPS39-205ENST00000562258 SPINK13Q1W4C9 94 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 C1orf229Q6ZS94 237 aaPredicted RBP7.26□□□□□ -1.25
VPS39-205ENST00000562258 C8orf31Q8N9H6 132 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 LINC00479Q96M42 142 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 TXNDC17Q9BRA2 123 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 EPDR1Q9UM22 224 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 ADGRG4Q8IZF6 3080 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 TMEM262E9PQX1 116 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 TOMM40O96008 361 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 SSBP2P81877 361 aaPredicted RBP7.26□□□□□ -1.25
VPS39-205ENST00000562258 C1QL4Q86Z23 238 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 PUSL1Q8N0Z8 303 aaKnown RBP7.26□□□□□ -1.25
VPS39-205ENST00000562258 ST6GALNAC6Q969X2 333 aa7.26□□□□□ -1.25
VPS39-205ENST00000562258 KNCNA6PVL3 124 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 B4DEV8 164 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 LCN12Q6JVE5 192 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 GPR82Q96P67 336 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 MYO15AQ9UKN7 3530 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 A8MXK9 166 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 CD28P10747 220 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 CKS2P33552 79 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 SRSF8Q9BRL6 282 aaKnown RBP7.25□□□□□ -1.25
VPS39-205ENST00000562258 GOLT1BQ9Y3E0 138 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 ITPR2Q14571 2701 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 HCFC1P51610 2035 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 IGLC1P0CG04 106 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 POU2AF1Q16633 256 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 FAM74A3Q4VXF1 159 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 PARD6GQ9BYG4 376 aaPredicted RBP7.25□□□□□ -1.25
VPS39-205ENST00000562258 RNASE7Q9H1E1 156 aaKnown RBP7.25□□□□□ -1.25
VPS39-205ENST00000562258 OTORQ9NRC9 128 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 PCSK5Q92824 1860 aa7.25□□□□□ -1.25
VPS39-205ENST00000562258 IGHV4OR15-8A0A075B7B6 117 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 A0A087WW49 117 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 FABP5P3A8MUU1 101 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 F6UB75 175 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 CA1P00915 261 aaPredicted RBP7.24□□□□□ -1.25
VPS39-205ENST00000562258 ASIPP42127 132 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 SNRPEP62304 92 aaKnown RBP7.24□□□□□ -1.25
VPS39-205ENST00000562258 ERCC8Q13216 396 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 IGHV3-73A0A0B4J1V6 119 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 A6NDX4 124 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 PRSS1P07477 247 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 FOXA3P55318 350 aaPredicted RBP7.24□□□□□ -1.25
VPS39-205ENST00000562258 TRAV12-2A0A075B6T6 113 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 LINC00862A6NCI5 91 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 TRBV12-3P01733 135 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 IGHG2P01859 326 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 LGALS1P09382 135 aaKnown RBP7.24□□□□□ -1.25
VPS39-205ENST00000562258 STAG3L2P0CL84 134 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 STAG3L3P0CL85 134 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 KRTDAPP60985 99 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 AMMECR1LQ6DCA0 310 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 ZNF343Q6P1L6 599 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 C12orf57Q99622 126 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 ATG101Q9BSB4 218 aa7.24□□□□□ -1.25
VPS39-205ENST00000562258 A0A1B0GUS0 222 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 C20orf202A1L168 122 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 FAM74A7A6NL05 159 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 Q6ZS46 218 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 Q6ZSV7 163 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 TTC9CQ8N5M4 171 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 Q6YL49 198 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 C9orf139Q6ZV77 190 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 TXN2Q99757 166 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 TCEAL7Q9BRU2 100 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 SEC11CQ9BY50 192 aa7.23□□□□□ -1.25
VPS39-205ENST00000562258 EXPH5Q8NEV8 1989 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms