RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 WFDC1Q9HC57 220 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 NPVFQ9HCQ7 196 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 C21orf62Q9NYP8 219 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 THYN1Q9P016 225 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 CELA1Q9UNI1 258 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 DMBT1Q9UGM3 2413 aaPredicted RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 TRAV1-1A0A0B4J248 108 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 UBE2L5PA0A1B0GUS4 154 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 SMCO3A2RU48 225 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 HMGB3O15347 200 aaKnown RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 SCGB2A1O75556 95 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 OR13C7P0DN81 318 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 GPX4P36969 197 aaPredicted RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 VWC2Q2TAL6 325 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 Q56UQ5 140 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM116Q8NCL8 245 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 LYPD6BQ8NI32 183 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 PCNPQ8WW12 178 aaKnown RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 SLC35E1Q96K37 410 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 ACTR3CQ9C0K3 210 aaPredicted RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 EIF5A2Q9GZV4 153 aaKnown RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 SLC39A9Q9NUM3 307 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 F11RQ9Y624 299 aaKnown RBP5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 X6R8D5 127 aa5.9□□□□□ -1.46
CCDC88C-214ENST00000557507 TEX50A0A1B0GTY4 177 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 A0A1W2PPV4 95 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 TMEM218A2RU14 115 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 F8W036 122 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 NUPL2O15504 423 aaKnown RBP5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 SNAPINO95295 136 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 FABP1P07148 127 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 CTSGP08311 255 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 CMC4P56277 68 aaPredicted RBP5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 DEFB131AP59861 70 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 AKR1C1Q04828 323 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 LGALS9BQ3B8N2 356 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 C2orf83Q53S99 150 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 TEPPQ6URK8 271 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 TCF24Q7RTU0 167 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 S100A7AQ86SG5 101 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 SUN5Q8TC36 379 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 SFT2D1Q8WV19 159 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 ATP6V0BQ99437 205 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 SEC11CQ9BY50 192 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 SH3BGRL3Q9H299 93 aa5.89□□□□□ -1.47
CCDC88C-214ENST00000557507 IGLV2-18A0A075B6J9 118 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 DEFB131BA0A096LNP1 70 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 NDUFS6O75380 124 aaKnown RBP5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 YIF1AO95070 293 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 APOHP02749 345 aaPredicted RBP5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 P0DMU3 169 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 FAM231AP0DMU4 169 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 FAM231CP0DMU5 169 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 MIFP14174 115 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 M6PRP20645 277 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 OPRK1P41145 380 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 GUK1Q16774 197 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 C12orf74Q32Q52 190 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 Q6ZR54 194 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 TRPT1Q86TN4 253 aaKnown RBP5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 BPIFCQ8NFQ6 507 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 OR10G4Q8NGN3 311 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 OR10G9Q8NGN4 311 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 OR10G7Q8NGN6 311 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 NPCDR1Q9BY65 106 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 MS4A6AQ9H2W1 248 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 NDUFA4L2Q9NRX3 87 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 WDR83OSQ9Y284 106 aa5.88□□□□□ -1.47
CCDC88C-214ENST00000557507 IGHV3-66A0A0C4DH42 116 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 CTXND1A0A1B0GTU2 59 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 RBFOX3A6NFN3 312 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 PMS2P5A8MQ11 134 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 IGHV3-48P01763 117 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 APOC3P02656 99 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 S100A7P31151 101 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 PSMB3P49720 205 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 SELENOTP62341 195 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 RELQ04864 619 aaPredicted RBP5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 KHDC3LQ587J8 217 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 SPINK9Q5DT21 86 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 FFAR4Q5NUL3 377 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 STHQ8IWL8 128 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 MAPKAPK5-AS1Q8N8E1 139 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 MBD3L1Q8WWY6 194 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 TXNDC17Q9BRA2 123 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 NDUFAF3Q9BU61 184 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 SLC35B3Q9H1N7 401 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 VSIRQ9H7M9 311 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 MANBALQ9NQG1 85 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 CLEC5AQ9NY25 188 aa5.87□□□□□ -1.47
CCDC88C-214ENST00000557507 MAP1LC3B2A6NCE7 125 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 KNCNA6PVL3 124 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 I3L2K1 104 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 AGPAT2O15120 278 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 CD5P06127 495 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 SFTA3P0C7M3 94 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 RPL29P47914 159 aaKnown RBP5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 TAS2R45P59539 299 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 RHOBP62745 196 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 PAFAH1B2P68402 229 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms