RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 AMTNQ6UX39 209 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 GTF2H5Q6ZYL4 71 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 C4orf33Q8N1A6 199 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 TEX29Q8N6K0 151 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 OR5D14Q8NGL3 314 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 OR5H6Q8NGV6 325 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 MRPL57Q9BQC6 102 aaKnown RBP2.35□□□□□ -2.03
LINC00643-204ENST00000555934 ADAT1Q9BUB4 502 aaKnown RBP2.35□□□□□ -2.03
LINC00643-204ENST00000555934 SNHG12Q9BXW3 62 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 BANF2Q9H503 90 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 C16orf95Q9H693 158 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 IQGAP2Q13576 1575 aa2.35□□□□□ -2.03
LINC00643-204ENST00000555934 MYH7P12883 1935 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 PLEKHH2Q8IVE3 1493 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 UBR2Q8IWV8 1755 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 FAM236AA0A1B0GUQ0 79 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 FAM236BA0A1B0GV22 79 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 ODF3BA8MYP8 253 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 H3BMG7 143 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 LY6HO94772 140 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 SLC25A16P16260 332 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 CRYBB3P26998 211 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 SRP14P37108 136 aaKnown RBP2.34□□□□□ -2.03
LINC00643-204ENST00000555934 FOXA3P55318 350 aaPredicted RBP2.34□□□□□ -2.03
LINC00643-204ENST00000555934 YPEL3P61236 119 aaPredicted RBP2.34□□□□□ -2.03
LINC00643-204ENST00000555934 EIF5AP63241 154 aaKnown RBP2.34□□□□□ -2.03
LINC00643-204ENST00000555934 DIAPH2-AS1Q14236 149 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 LINC01554Q52M75 96 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 HSD17B12Q53GQ0 312 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 COL5A1-AS1Q5SY13 56 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 LCN15Q6UWW0 184 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 C9orf62Q8N4C0 152 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 OR8D4Q8NGM9 314 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 SDF2Q99470 211 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 RERGLQ9H628 205 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 SLC39A9Q9NUM3 307 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 CCDC167Q9P0B6 97 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 CDK5RAP2Q96SN8 1893 aa2.34□□□□□ -2.03
LINC00643-204ENST00000555934 LAMC1P11047 1609 aa2.34□□□□□ -2.04
LINC00643-204ENST00000555934 NESP48681 1621 aa2.34□□□□□ -2.04
LINC00643-204ENST00000555934 KIF14Q15058 1648 aa2.34□□□□□ -2.04
LINC00643-204ENST00000555934 ADCY10Q96PN6 1610 aa2.34□□□□□ -2.04
LINC00643-204ENST00000555934 MPDZO75970 2070 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 PZPP20742 1482 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 RALGAPBQ86X10 1494 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 EPRSP07814 1512 aaKnown RBP2.33□□□□□ -2.04
LINC00643-204ENST00000555934 ZFYVE16Q7Z3T8 1539 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 ADAMTS12P58397 1594 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 PLXND1Q9Y4D7 1925 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 TRAV27A0A087WT01 109 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 IGKV1-9A0A0C4DH69 117 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 ZNF727A8MUV8 499 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 A8MWV9 139 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 UBFD1O14562 309 aaKnown RBP2.33□□□□□ -2.04
LINC00643-204ENST00000555934 NDUFB3O43676 98 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 IGHV3-30-3P0DP02 117 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 HIST1H1DP16402 221 aaKnown RBP2.33□□□□□ -2.04
LINC00643-204ENST00000555934 CRHBPP24387 322 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 DYNLT3P51808 116 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 ARPP19P56211 112 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 HBBP68871 147 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 QRFPP83859 136 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 PLGLB1Q02325 96 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 HSD52Q0P140 79 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 SPANXN3Q5MJ09 141 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 PHF5AQ7RTV0 110 aaKnown RBP2.33□□□□□ -2.04
LINC00643-204ENST00000555934 SPATA12Q7Z6I5 190 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 OR10AC1Q8NH08 325 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 WFDC5Q8TCV5 224 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 NAT14Q8WUY8 206 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 UPK3BQ9BT76 320 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 MRPL32Q9BYC8 188 aaKnown RBP2.33□□□□□ -2.04
LINC00643-204ENST00000555934 SMDT1Q9H4I9 107 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 AKAP12Q02952 1782 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 DAPK1P53355 1430 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 FER1L6Q2WGJ9 1857 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 NUP210LQ5VU65 1888 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 MYOM2P54296 1465 aa2.33□□□□□ -2.04
LINC00643-204ENST00000555934 DENND4CQ5VZ89 1909 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 MAGI3Q5TCQ9 1506 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 TARBP1Q13395 1621 aaKnown RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 ITSN2Q9NZM3 1697 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 A0A087X0T9 212 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 A0A0G2JMM0 328 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 TRBV27A0A0K0K1C4 114 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 A0A1W2PPB8 328 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 C7orf71A4D174 169 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 OR2T8A6NH00 312 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KIR3DP1A8MWS1 328 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 FNDC10F2Z333 226 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 CCDC179H3BU77 68 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 CDC42EP2O14613 210 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 LEPROTO15243 131 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 TCRAP04437 139 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 NPPCP23582 126 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 ZNF93P35789 620 aaPredicted RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 RPL27AP46776 148 aaKnown RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 TSPEAR-AS2P59090 65 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 TPPP2P59282 170 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KRTAP12-1P59990 96 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms