RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 S100GP29377 79 aa1.78□□□□□ -2.12
SCFD1-209ENST00000553280 S100A11P31949 105 aa1.78□□□□□ -2.12
SCFD1-209ENST00000553280 ZNF93P35789 620 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-209ENST00000553280 CNBPP62633 177 aaKnown RBP1.78□□□□□ -2.12
SCFD1-209ENST00000553280 EIF3IQ13347 325 aaKnown RBP1.78□□□□□ -2.12
SCFD1-209ENST00000553280 C1orf134Q5TEV5 83 aa1.78□□□□□ -2.12
SCFD1-209ENST00000553280 MUCL1Q96DR8 90 aa1.78□□□□□ -2.12
SCFD1-209ENST00000553280 TP53RKQ96S44 253 aa1.78□□□□□ -2.12
SCFD1-209ENST00000553280 TRAV10A0A0B4J240 114 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 IL9P15248 144 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 POLR2HP52434 150 aaKnown RBP1.77□□□□□ -2.13
SCFD1-209ENST00000553280 CDK6Q00534 326 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 TEX261Q6UWH6 196 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 ZNF833PQ6ZTB9 187 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 SKA2Q8WVK7 121 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-209ENST00000553280 PATE1Q8WXA2 126 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 ZC2HC1AQ96GY0 325 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 HYLS1Q96M11 299 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 MED31Q9Y3C7 131 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 U3KQ87 197 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 LAMB2P55268 1798 aa1.77□□□□□ -2.13
SCFD1-209ENST00000553280 LOC110117498A0A087WWA1 95 aa1.76□□□□□ -2.13
SCFD1-209ENST00000553280 KPNA4O00629 521 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-209ENST00000553280 OR9Q1Q8NGQ5 310 aa1.76□□□□□ -2.13
SCFD1-209ENST00000553280 C10orf105Q8TEF2 133 aa1.76□□□□□ -2.13
SCFD1-209ENST00000553280 RAB37Q96AX2 223 aa1.76□□□□□ -2.13
SCFD1-209ENST00000553280 TCEAL2Q9H3H9 227 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-209ENST00000553280 SCN8AQ9UQD0 1980 aa1.76□□□□□ -2.13
SCFD1-209ENST00000553280 HEATR5BQ9P2D3 2071 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 OR2T8A6NH00 312 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 ERC2-IT1O76042 136 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 KRTAP26-1Q6PEX3 210 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 HRCT1Q6UXD1 115 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 FAM216BQ8N7L0 139 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 CCDC115Q96NT0 180 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 MCEEQ96PE7 176 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 GINS2Q9Y248 185 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 ADGRB2O60241 1585 aa1.75□□□□□ -2.13
SCFD1-209ENST00000553280 BCL9O00512 1426 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 TRAV27A0A087WT01 109 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 hDV103S1A0JD37 113 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 M0R2N4 97 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 GEMIN2O14893 280 aaKnown RBP1.74□□□□□ -2.13
SCFD1-209ENST00000553280 CCL16O15467 120 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 FABP2P12104 132 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 RPL7P18124 248 aaKnown RBP1.74□□□□□ -2.13
SCFD1-209ENST00000553280 SDC2P34741 201 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 Q6ZSA8 131 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 ARPINQ7Z6K5 226 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 GGACTQ9BVM4 153 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 CDC42SE1Q9NRR8 79 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 HSPB11Q9Y547 144 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 PCDH15Q96QU1 1955 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 KIAA1107Q9UPP5 1409 aa1.74□□□□□ -2.13
SCFD1-209ENST00000553280 N4BP2Q86UW6 1770 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-209ENST00000553280 IGHV1-58A0A0C4DH39 117 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 INE1O15225 51 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 LYRM1O43325 122 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 MT-ND6P03923 174 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 CD2P06729 351 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 CXCL8P10145 99 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 FAM74A1Q5RGS3 127 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 TMEM14EPQ6UXP3 125 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 LRRC18Q8N456 261 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 Q8TAT8 98 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 TAF9BQ9HBM6 251 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 ALPK2Q86TB3 2170 aa1.73□□□□□ -2.13
SCFD1-209ENST00000553280 EML6Q6ZMW3 1958 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 LYNX1P0DP58 116 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 RPS3P23396 243 aaKnown RBP eCLIP1.72□□□□□ -2.13
SCFD1-209ENST00000553280 NDUFA6P56556 154 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 MPV17LQ2QL34 196 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 OR5AS1Q8N127 324 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 DIRC1Q969H9 104 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 LINC00052Q96N35 136 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 TAS2R7Q9NYW3 318 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 ORMDL1Q9P0S3 153 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 TRAPPC2LQ9UL33 140 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 RFX7Q2KHR2 1363 aa1.72□□□□□ -2.13
SCFD1-209ENST00000553280 TCOF1Q13428 1488 aaKnown RBP1.71□□□□□ -2.14
SCFD1-209ENST00000553280 TRBV7-6A0A0J9YX20 115 aa1.71□□□□□ -2.14
SCFD1-209ENST00000553280 TRBV6-4A0A1B0GX49 114 aa1.71□□□□□ -2.14
SCFD1-209ENST00000553280 ANGP03950 147 aaKnown RBP1.71□□□□□ -2.14
SCFD1-209ENST00000553280 OR4B1Q8NGF8 309 aa1.71□□□□□ -2.14
SCFD1-209ENST00000553280 PYDC1Q8WXC3 89 aa1.71□□□□□ -2.14
SCFD1-209ENST00000553280 C19orf12Q9NSK7 152 aa1.71□□□□□ -2.14
SCFD1-209ENST00000553280 MED12LQ86YW9 2145 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 TRBV6-7A0A0A0MS04 114 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 LINC00305Q7Z4B0 112 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 TMEM35BQ8NCS4 154 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 ZNF431Q8TF32 576 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-209ENST00000553280 LXNQ9BS40 222 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 LAMB4A4D0S4 1761 aa1.7□□□□□ -2.14
SCFD1-209ENST00000553280 ARAP1Q96P48 1450 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 INTS1Q8N201 2190 aaKnown RBP1.69□□□□□ -2.14
SCFD1-209ENST00000553280 FABP4P15090 132 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 MRPS36P82909 103 aaKnown RBP1.69□□□□□ -2.14
SCFD1-209ENST00000553280 OR5H6Q8NGV6 325 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 CCL4L1Q8NHW4 92 aa1.69□□□□□ -2.14
SCFD1-209ENST00000553280 BORCS5Q969J3 196 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms