RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TRRAPQ9Y4A5 3859 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 TRAV5A0A0B4J249 113 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 SAP30O75446 220 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 LEMD1Q68G75 181 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 LCN12Q6JVE5 192 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 RBPMS2Q6ZRY4 209 aaKnown RBP12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 ZNF503Q96F45 646 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 MED9Q9NWA0 146 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 SORL1Q92673 2214 aa12.1□□□□□ -0.47
PRPF40A-212ENST00000545856 TRBV19A0A075B6N1 114 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 ZNF785A8K8V0 405 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 ISLRO14498 428 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 CMC4P56277 68 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 SMDT1Q9H4I9 107 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 PRELID1Q9Y255 219 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 PKD1L1Q8TDX9 2849 aa12.09□□□□□ -0.47
PRPF40A-212ENST00000545856 IGHV3-49A0A0A0MS15 119 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 OR4C46A6NHA9 309 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 PYYP10082 97 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 ID1P41134 155 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 MRPL53Q96EL3 112 aaKnown RBP12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 FAM110AQ9BQ89 295 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 AAMDCQ9H7C9 122 aa12.08□□□□□ -0.48
PRPF40A-212ENST00000545856 IGHV3OR16-13A0A075B7E8 117 aa12.07□□□□□ -0.48
PRPF40A-212ENST00000545856 IGHV3-74A0A0B4J1X5 117 aa12.07□□□□□ -0.48
PRPF40A-212ENST00000545856 IGHV3-66A0A0C4DH42 116 aa12.07□□□□□ -0.48
PRPF40A-212ENST00000545856 ZNF586Q9NXT0 402 aa12.07□□□□□ -0.48
PRPF40A-212ENST00000545856 SMAD5-AS1Q9Y6J3 95 aa12.07□□□□□ -0.48
PRPF40A-212ENST00000545856 H3BQ15 152 aa12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 HMGB3O15347 200 aaKnown RBP12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 FGF8P55075 233 aaPredicted RBP12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 RPL11P62913 178 aaKnown RBP12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 TMEM61Q8N0U2 210 aa12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 ZNF331Q9NQX6 463 aaPredicted RBP12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 OTORQ9NRC9 128 aa12.06□□□□□ -0.48
PRPF40A-212ENST00000545856 SOCS3O14543 225 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 OR10J4P0C629 311 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 BCL2P10415 239 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 SNRPD3P62318 126 aaKnown RBP12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 CD300EQ496F6 205 aaPredicted RBP12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 IQCF2Q8IXL9 164 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 RXFP4Q8TDU9 374 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 DCANP1Q8TF63 244 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 MS4A6AQ9H2W1 248 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 SERTM2A0A1B0GWG4 89 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 RAB19A4D1S5 217 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 K7EQG2 157 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 DNASE2O00115 360 aaPredicted RBP12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 EDN2P20800 178 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 FAM210AQ96ND0 272 aa12.05□□□□□ -0.48
PRPF40A-212ENST00000545856 MGAM2Q2M2H8 2515 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 FBLL1A6NHQ2 334 aaKnown RBP12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 FAM74A7A6NL05 159 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 NDUFB4O95168 129 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 C5orf17Q8NAS9 161 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 C16orf92Q96LL3 132 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 GNG13Q9P2W3 67 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 VAX2Q9UIW0 290 aa12.04□□□□□ -0.48
PRPF40A-212ENST00000545856 PDE6DO43924 150 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 MEF2BQ02080 365 aaPredicted RBP12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 ZNF506Q5JVG8 444 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 BLNKQ8WV28 456 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 HIST1H2BAQ96A08 127 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 RPUSD4Q96CM3 377 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 C17orf77Q96MU5 243 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 Q9H3A6 140 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 TMPRSS5Q9H3S3 457 aa12.03□□□□□ -0.48
PRPF40A-212ENST00000545856 LINC00862A6NCI5 91 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 RBFOX3A6NFN3 312 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 F6UZH7 168 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 CSN1S1P47710 185 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 CCL20P78556 96 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 CMTM2Q8TAZ6 248 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 NBEAL1Q6ZS30 2694 aa12.02□□□□□ -0.49
PRPF40A-212ENST00000545856 LOC102723971A0A1B0GUV8 181 aa12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 RANP62826 216 aaKnown RBP12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 PSG3Q16557 428 aa12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 BEAN1Q3B7T3 259 aa12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 UQCC3Q6UW78 93 aa12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 CCDC28AQ8IWP9 274 aa12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 EIF4E3Q8N5X7 224 aaKnown RBP12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 ZNF256Q9Y2P7 627 aaPredicted RBP12.01□□□□□ -0.49
PRPF40A-212ENST00000545856 A0A1B0GV50 99 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 C11orf94C9JXX5 98 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 TMEM250H0YL14 139 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 K7EQM0 130 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 SLC17A3O00476 420 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 PAGE4O60829 102 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 EIF3GO75821 320 aaKnown RBP eCLIP12□□□□□ -0.49
PRPF40A-212ENST00000545856 SLC25A5P05141 298 aaKnown RBP12□□□□□ -0.49
PRPF40A-212ENST00000545856 PEA15Q15121 130 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 NDUFA5Q16718 116 aa12□□□□□ -0.49
PRPF40A-212ENST00000545856 CMYA5Q8N3K9 4069 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 TRAV8-2A0A0B4J237 113 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 RBAKDNA6NC62 111 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 GGTLC3B5MD39 225 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 S100A9P06702 114 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 IGLL1P15814 213 aa11.99□□□□□ -0.49
PRPF40A-212ENST00000545856 EGFEM1PQ0D2K5 195 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms