RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZNF705FA8MVS1 300 aaPredicted RBP10.75□□□□□ -0.69
RTN3-210ENST00000540798 ZNF705DP0CH99 300 aaPredicted RBP10.75□□□□□ -0.69
RTN3-210ENST00000540798 ZNF705BP0CI00 300 aaPredicted RBP10.75□□□□□ -0.69
RTN3-210ENST00000540798 Q0VG73 95 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 CT83Q5H943 113 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 LINC00322Q6ZN03 302 aaPredicted RBP10.75□□□□□ -0.69
RTN3-210ENST00000540798 TMEM256Q8N2U0 113 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 C5orf56Q8N8D9 126 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 TMEM18Q96B42 140 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 C17orf77Q96MU5 243 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 FBXL7Q9UJT9 491 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 SVEP1Q4LDE5 3571 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 ATP6V0E1O15342 81 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 PDE6HQ13956 83 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 IGHV1-69DA0A0B4J2H0 117 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 A0A1B0GUS0 222 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 HSBP1L1C9JCN9 74 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 NPIPB6E9PJ23 425 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 NUPR1O60356 82 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 IGHV1-69P01742 117 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 TMEM75Q8N9X5 138 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 ZNF502Q8TBZ5 544 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 PIFOQ8TCI5 191 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 SGK494Q96LW2 274 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 NAT8BQ9UHF3 227 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 ZFP30Q9Y2G7 519 aa10.75□□□□□ -0.69
RTN3-210ENST00000540798 M0QZK8 103 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 NUP35Q8NFH5 326 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 DOPEY1Q5JWR5 2465 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 HLA-DQA1P01909 254 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 C19orf54Q5BKX5 351 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 MEGF9Q9H1U4 602 aa10.74□□□□□ -0.69
RTN3-210ENST00000540798 GRIFINA4D1Z8 144 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 OR2T8A6NH00 312 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 CRISP2P16562 243 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 CRIP2P52943 208 aaPredicted RBP10.73□□□□□ -0.69
RTN3-210ENST00000540798 C1orf194Q5T5A4 169 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 PRR27Q6MZM9 219 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 RPP21Q9H633 154 aaKnown RBP10.73□□□□□ -0.69
RTN3-210ENST00000540798 SCGB2A1O75556 95 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 IGHV3-23P01764 117 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 SLC35B1P78383 322 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 UNQ5815/PRO19632Q6UWF5 114 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 CMTM2Q8TAZ6 248 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 PAM16Q9Y3D7 125 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 SPINK4O60575 86 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 MRPL54Q6P161 138 aaKnown RBP10.73□□□□□ -0.69
RTN3-210ENST00000540798 GOLT1AQ6ZVE7 132 aa10.73□□□□□ -0.69
RTN3-210ENST00000540798 A0A1B0GXF2 115 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 ZNF785A8K8V0 405 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 SMIM15Q7Z3B0 74 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 ATP5L2Q7Z4Y8 100 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 TMUB1Q9BVT8 246 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 FLNCQ14315 2725 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 IGHV4-30-2A0A087WSY4 118 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 LINC01548A6NM66 108 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 OR10J3Q5JRS4 329 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 STPG4Q8N801 248 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 GFRA4Q9GZZ7 299 aa10.72□□□□□ -0.69
RTN3-210ENST00000540798 FASNP49327 2511 aaKnown RBP10.72□□□□□ -0.69
RTN3-210ENST00000540798 TRAV8-1A0A0A6YYK1 113 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 KIR2DL5BA0A0G2JN68 375 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 KIR2DL5BA0A0G2JPC4 375 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 DIRC3C9JPN6 131 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 BMPR1BO00238 502 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 ECSCRQ19T08 205 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 IQCJQ1A5X6 159 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 C15orf32Q32M92 178 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 GDF5OSQ5U4N7 250 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 KIR2DL5AQ8N109 375 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 BBC3Q96PG8 261 aaPredicted RBP10.71□□□□□ -0.69
RTN3-210ENST00000540798 MOB4Q9Y3A3 225 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 ZFHX3Q15911 3703 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 ATP5J2P56134 94 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 ZFAND3Q9H8U3 227 aa10.71□□□□□ -0.69
RTN3-210ENST00000540798 FAM231BA6NCW3 169 aa10.71□□□□□ -0.7
RTN3-210ENST00000540798 HIGD1CA8MV81 97 aa10.71□□□□□ -0.7
RTN3-210ENST00000540798 RHOGP84095 191 aa10.71□□□□□ -0.7
RTN3-210ENST00000540798 PSG3Q16557 428 aa10.71□□□□□ -0.7
RTN3-210ENST00000540798 ZNF331Q9NQX6 463 aaPredicted RBP10.71□□□□□ -0.7
RTN3-210ENST00000540798 RIPPLY3P57055 190 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 Q71RC1 249 aaPredicted RBP10.7□□□□□ -0.7
RTN3-210ENST00000540798 OR4B1Q8NGF8 309 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 GTSF1Q8WW33 167 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 CCDC140Q96MF4 163 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 GNB4Q9HAV0 340 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 RABAC1Q9UI14 185 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 SMAD5-AS1Q9Y6J3 95 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 MED13LQ71F56 2210 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 TRAV40A0A0B4J280 105 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 A8MWL6 223 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 F2Z2F3 143 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 ZNF253O75346 499 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 SERF1AO75920 110 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 P01737 135 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 PRB1P04280 392 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 RPL7P18124 248 aaKnown RBP10.7□□□□□ -0.7
RTN3-210ENST00000540798 PAFAH1B2P68402 229 aa10.7□□□□□ -0.7
RTN3-210ENST00000540798 CIARTQ8N365 385 aaPredicted RBP10.7□□□□□ -0.7
RTN3-210ENST00000540798 CSTL1Q9H114 145 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms