RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	UBE2C	O00762	179 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	OR7C2	O60412	319 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	APOH	P02749	345 aa	Predicted RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SEC11B	P0C7V7	166 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	HIST1H1E	P10412	219 aa	Known RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	ATP6V0C	P27449	155 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	CDC34	P49427	236 aa	Predicted RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	RAB5C	P51148	216 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	RAB2A	P61019	212 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	UBE2L3	P68036	154 aa	Known RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	DEFB121	Q5J5C9	76 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PSMG4	Q5JS54	123 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	RPL7L1	Q6DKI1	246 aa	Known RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	DPPA3	Q6W0C5	159 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SLC51B	Q86UW2	128 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	WFDC3	Q8IUB2	231 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	KRTAP19-1	Q8IUB9	90 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	GBGT1	Q8N5D6	347 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	OR10G4	Q8NGN3	311 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	OR10G9	Q8NGN4	311 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	OR10G7	Q8NGN6	311 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	MRPL53	Q96EL3	112 aa	Known RBP	5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	HRH4	Q9H3N8	390 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SRD5A3	Q9H8P0	318 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	MAP6D1	Q9H9H5	199 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PRELID1	Q9Y255	219 aa		5.8	□□□□□ -1.48
LIMCH1-222	ENST00000515847	KIR2DL5B	A0A0G2JN68	375 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	KIR2DL5B	A0A0G2JPC4	375 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	IZUMO1R	A6ND01	250 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SMLR1	H3BR10	107 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	DUSP14	O95147	198 aa	Known RBP	5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	ZNF688	P0C7X2	276 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	NHLRC4	P0CG21	123 aa	Predicted RBP	5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	IGHV4-30-4	P0DP06	118 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SPP1	P10451	314 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	CSN1S1	P47710	185 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	DEFB131A	P59861	70 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847		Q5BKY6	102 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	MORN3	Q6PF18	240 aa	Predicted RBP	5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	TMEM182	Q6ZP80	229 aa	Predicted RBP	5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	FOXI2	Q6ZQN5	318 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	TMUB2	Q71RG4	321 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	BAP18	Q8IXM2	172 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	KIR2DL5A	Q8N109	375 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	LYPD1	Q8N2G4	141 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	KIR2DL5B	Q8NHK3	375 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	DCANP1	Q8TF63	244 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	TMEM37	Q8WXS4	190 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PAXX	Q9BUH6	204 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	C1QTNF4	Q9BXJ3	329 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	OR51M1	Q9H341	326 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	ZMAT4	Q9H898	229 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	TMEM167B	Q9NRX6	74 aa		5.79	□□□□□ -1.48
LIMCH1-222	ENST00000515847	CTXND1	A0A1B0GTU2	59 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	CXorf1	O96002	111 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	AMBP	P02760	352 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	CD7	P09564	240 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PPT1	P50897	306 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	ODF3L2	Q3SX64	289 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	LEMD1	Q68G75	181 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	FAM122C	Q6P4D5	195 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PATE2	Q6UY27	113 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	ZNF738	Q8NE65	137 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PHYHIPL	Q96FC7	376 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	LINC00052	Q96N35	136 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	B9D2	Q9BPU9	175 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	SPATA25	Q9BR10	227 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	WFDC1	Q9HC57	220 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	PPP1R14D	Q9NXH3	145 aa		5.78	□□□□□ -1.48
LIMCH1-222	ENST00000515847	HUWE1	Q7Z6Z7	4374 aa	Known RBP	5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SERTM2	A0A1B0GWG4	89 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847		K7EQM0	130 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HBE1	P02100	147 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	IGLC2	P0DOY2	106 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HLA-DRB4	P13762	266 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	LGALSL	Q3ZCW2	172 aa	Predicted RBP	5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	DEFB125	Q8N687	156 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OR11H4	Q8NGC9	324 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OR10J6P	Q8NGY7	276 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CMTM2	Q8TAZ6	248 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RXFP4	Q8TDU9	374 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RNF141	Q8WVD5	230 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TCEAL7	Q9BRU2	100 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	NKX6-2	Q9C056	277 aa	Predicted RBP	5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ZNF331	Q9NQX6	463 aa	Predicted RBP	5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	UBQLN2	Q9UHD9	624 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HLA-DRB4	X5D2U9	266 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	COL7A1	Q02388	2944 aa		5.77	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TRBV19	A0A075B6N1	114 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FBLL1	A6NHQ2	334 aa	Known RBP	5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SOCS3	O14543	225 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	PAX4	O43316	350 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	NBEAP1	P0C6P0	100 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FRMD6-AS1	P0C7T7	363 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TSPO	P30536	169 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	GCSAML	Q5JQS6	135 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ACTL10	Q5JWF8	245 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MIR17HG	Q75NE6	70 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	IQCF2	Q8IXL9	164 aa		5.76	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms