RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 Q6ZR03 302 aa10.65□□□□□ -0.7
TCOF1-213ENST00000514442 SSC4DQ8WTU2 575 aa10.65□□□□□ -0.7
TCOF1-213ENST00000514442 PCNX2A6NKB5 2137 aa10.65□□□□□ -0.7
TCOF1-213ENST00000514442 IGLV3-1P01715 115 aa10.65□□□□□ -0.71
TCOF1-213ENST00000514442 ETDBQ3ZM63 59 aa10.65□□□□□ -0.71
TCOF1-213ENST00000514442 GTSCR1Q86UQ5 136 aa10.65□□□□□ -0.71
TCOF1-213ENST00000514442 DLX4Q92988 240 aaPredicted RBP10.65□□□□□ -0.71
TCOF1-213ENST00000514442 TSPAN13O95857 204 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 KLF17Q5JT82 389 aaPredicted RBP10.64□□□□□ -0.71
TCOF1-213ENST00000514442 SFTA2Q6UW10 78 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 FAM159AQ6UWV7 190 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 C10orf126Q8N4M7 172 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 NPFFR1Q9GZQ6 430 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 LRRK1Q38SD2 2015 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 COL4A3Q01955 1670 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 ZNF106Q9H2Y7 1883 aaKnown RBP10.64□□□□□ -0.71
TCOF1-213ENST00000514442 M0R381 172 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 WNT2P09544 360 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
TCOF1-213ENST00000514442 GFRA4Q9GZZ7 299 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 FAM231DQ6ZW35 169 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 GLMPQ8WWB7 406 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 ZNF56Q15929 161 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 DUX4L9Q6RFH8 374 aaPredicted RBP10.64□□□□□ -0.71
TCOF1-213ENST00000514442 WDR86Q86TI4 376 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 SCRT2Q9NQ03 307 aa10.64□□□□□ -0.71
TCOF1-213ENST00000514442 IGFL3Q6UXB1 125 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 DOCK11Q5JSL3 2073 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 SIVA1O15304 175 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 LINC01559Q495D7 138 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 ZNF329Q86UD4 541 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 TEX48A0A1B0GUV7 120 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 D6R8Y8 96 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 LGALS3P17931 250 aaKnown RBP10.63□□□□□ -0.71
TCOF1-213ENST00000514442 VWC2Q2TAL6 325 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 ITLN2Q8WWU7 325 aaPredicted RBP10.63□□□□□ -0.71
TCOF1-213ENST00000514442 K7EM74 188 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 LINC00479Q96M42 142 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 CADP27708 2225 aa10.63□□□□□ -0.71
TCOF1-213ENST00000514442 WNK2Q9Y3S1 2297 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 BPESC1Q9GZL8 116 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 CTRLP40313 264 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 NXT2Q9NPJ8 142 aaKnown RBP10.62□□□□□ -0.71
TCOF1-213ENST00000514442 FAM215AQ9Y5M1 114 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 TRAV8-4A0A0B4J246 113 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 IGKV1-16P04430 117 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 NBL1P41271 181 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 VDAC2P45880 294 aaPredicted RBP10.62□□□□□ -0.71
TCOF1-213ENST00000514442 MUC6Q6W4X9 2439 aa10.62□□□□□ -0.71
TCOF1-213ENST00000514442 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 PVRIGQ6DKI7 326 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 VGLL1Q99990 258 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 SPANXA1Q9NS26 97 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 FNDC10F2Z333 226 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 ABCA4P78363 2273 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 SRD5A1P18405 259 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 LSM4Q9Y4Z0 139 aaKnown RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 LTBP2Q14767 1821 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 BUB1B-PAK6H3BSN5 160 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 RNASE4P34096 147 aaKnown RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 IFI27P40305 119 aaPredicted RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 FXYD7P58549 80 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 TCF15Q12870 199 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 BEX4Q9NWD9 120 aaPredicted RBP10.61□□□□□ -0.71
TCOF1-213ENST00000514442 SS18L2Q9UHA2 77 aa10.61□□□□□ -0.71
TCOF1-213ENST00000514442 PRSS57Q6UWY2 283 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 SCGB3A1Q96QR1 104 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 PRSS22Q9GZN4 317 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 GGTLC3B5MD39 225 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 LGALS9BQ3B8N2 356 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 CT83Q5H943 113 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 LGALS9CQ6DKI2 356 aa10.6□□□□□ -0.71
TCOF1-213ENST00000514442 YLPM1P49750 1951 aaKnown RBP10.6□□□□□ -0.71
TCOF1-213ENST00000514442 CEACAM4O75871 244 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 MLANAQ16655 118 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 WFDC12Q8WWY7 111 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 MBNL3Q9NUK0 354 aaKnown RBP10.59□□□□□ -0.71
TCOF1-213ENST00000514442 CRXO43186 299 aaPredicted RBP10.59□□□□□ -0.71
TCOF1-213ENST00000514442 C15orf32Q32M92 178 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 TECTAO75443 2155 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 TRAV41A0A0B4J266 112 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 H3BUX3 64 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 TCRAP04437 139 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 TMEM167AQ8TBQ9 72 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 ZNF492Q9P255 531 aa10.59□□□□□ -0.71
TCOF1-213ENST00000514442 PRTN3P24158 256 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 ODF3L1Q8IXM7 274 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 PGPEP1Q9NXJ5 209 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 PSG8Q9UQ74 426 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 MOB4Q9Y3A3 225 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 TRAV26-1A0A087WT03 109 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 ASIPP42127 132 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 UBE2L6O14933 153 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 CRYBA4P53673 196 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 COL4A4P53420 1690 aaPredicted RBP10.58□□□□□ -0.72
TCOF1-213ENST00000514442 IGKV3OR2-268A0A0C4DH90 116 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 NPIPB6E9PJ23 425 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 ZC2HC1AQ96GY0 325 aa10.58□□□□□ -0.72
TCOF1-213ENST00000514442 SSBP2P81877 361 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms