RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 TRAV13-2A0A0B4J235 113 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 TCRBV5S1A1TA0A578 114 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 NTN3O00634 580 aaPredicted RBP7.2□□□□□ -1.26
VCAN-208ENST00000512590 PRR25Q96S07 402 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 TIAM2Q8IVF5 1701 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 IGLV2-18A0A075B6J9 118 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 NANOS3P60323 173 aaKnown RBP7.2□□□□□ -1.26
VCAN-208ENST00000512590 HERVK_113P63121 156 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 WIPF2Q8TF74 440 aaPredicted RBP7.2□□□□□ -1.26
VCAN-208ENST00000512590 SLX4Q8IY92 1834 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 A0A087WWC5 75 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 INAFM1C9JVW0 142 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 RNASE7Q9H1E1 156 aaKnown RBP7.2□□□□□ -1.26
VCAN-208ENST00000512590 IFT22Q9H7X7 185 aa7.2□□□□□ -1.26
VCAN-208ENST00000512590 G3V318 75 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 TBX6O95947 436 aaPredicted RBP7.19□□□□□ -1.26
VCAN-208ENST00000512590 CBLN2Q8IUK8 224 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 VSIRQ9H7M9 311 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 RGPD5Q99666 1765 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 TINCRA0A1B0GVN0 87 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 C9JQL5 133 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 Q0VG73 95 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 KIAA0040Q15053 153 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 LINC00299Q6ZSB3 139 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 GAFA1Q96PS6 74 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 AMELYQ99218 206 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 UBR2Q8IWV8 1755 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 ZNF318Q5VUA4 2279 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 APRG1Q8IVJ8 170 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 IMMP2LQ96T52 175 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 C5orf63A6NC05 138 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 SVIPQ8NHG7 77 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 D6R8Y8 96 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 ARMS2P0C7Q2 107 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 SLURP1P55000 103 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 TRGV9Q99603 122 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 FBLN5Q9UBX5 448 aa7.19□□□□□ -1.26
VCAN-208ENST00000512590 C5P01031 1676 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 IGKV1-27A0A075B6S5 117 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 TRAV26-2A0A0B4J265 109 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 TGFBR3LH3BV60 316 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 INSL3P51460 131 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 AMTNQ6UX39 209 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 ZNF497Q6ZNH5 498 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 PKD1L3Q7Z443 1732 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 IGKV2D-26A0A0A0MRZ7 120 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 A8MWP6 167 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 ZNF664Q8N3J9 261 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 FGFBP3Q8TAT2 258 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 TP53TG1Q9Y2A0 90 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 A0A096LNI7 61 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 ETV2O00321 342 aaPredicted RBP7.18□□□□□ -1.26
VCAN-208ENST00000512590 FOXI2Q6ZQN5 318 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 LY96Q9Y6Y9 160 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 ALS2Q96Q42 1657 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 TRAV1-1A0A0B4J248 108 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 H0YJW9 148 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 TMEM141Q96I45 108 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 HIGD2AQ9BW72 106 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 RETNQ9HD89 108 aa7.18□□□□□ -1.26
VCAN-208ENST00000512590 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.17□□□□□ -1.26
VCAN-208ENST00000512590 VSIG2Q96IQ7 327 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 C9orf85Q96MD7 179 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 MYH6P13533 1939 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 RGPD2P0DJD1 1756 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 TRAV4A0A0B4J268 109 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 CD177Q8N6Q3 437 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 FNDC4Q9H6D8 234 aaPredicted RBP7.17□□□□□ -1.26
VCAN-208ENST00000512590 TTC3P53804 2025 aa7.17□□□□□ -1.26
VCAN-208ENST00000512590 SHANK3Q9BYB0 1731 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 IGHV7-4-1A0A0J9YVY3 117 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 SRRM5B3KS81 715 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 FOXE3Q13461 319 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 ZC2HC1BQ5TFG8 222 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 MESP1Q9BRJ9 268 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 IGKV1-8A0A0C4DH67 115 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 SAMD5Q5TGI4 173 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 FAM19A1Q7Z5A9 133 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 C5orf38Q86SI9 138 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 LINC00337Q8N6G1 96 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 GFI1Q99684 422 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 CRYGDP07320 174 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 C1orf100Q5SVJ3 147 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 ZNF638Q14966 1978 aaKnown RBP7.16□□□□□ -1.26
VCAN-208ENST00000512590 A0A1W2PRE2 83 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 LYPD3O95274 346 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 IGLV3-19P01714 112 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 Q6ZNX1 250 aa7.16□□□□□ -1.26
VCAN-208ENST00000512590 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.16□□□□□ -1.26
VCAN-208ENST00000512590 SRSF8Q9BRL6 282 aaKnown RBP7.16□□□□□ -1.26
VCAN-208ENST00000512590 SCN3AQ9NY46 2000 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 AKAP11Q9UKA4 1901 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 BTAF1O14981 1849 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 USP17L23D6RBM5 183 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 SPINK8P0C7L1 97 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 ASCC3Q8N3C0 2202 aaKnown RBP7.15□□□□□ -1.26
VCAN-208ENST00000512590 CCL20P78556 96 aa7.15□□□□□ -1.26
VCAN-208ENST00000512590 TRBV5-3A0A0A0MS03 114 aa7.15□□□□□ -1.27
VCAN-208ENST00000512590 TRBV5-5A0A0J9YX44 114 aa7.15□□□□□ -1.27
VCAN-208ENST00000512590 ZNF134P52741 427 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms