RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 PMCHP20382 165 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 MMDQ15546 238 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 CYB5R2Q6BCY4 276 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 NIT1Q86X76 327 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 DPM3Q9P2X0 92 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 RNF24Q9Y225 148 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.65□□□□□ -0.382e-12■■■□□ 17
SQSTM1-213ENST00000510187 CENPVL3A0A0U1RRI6 287 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 GDF5OSQ5U4N7 250 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 ZNF705AQ6ZN79 300 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 LHFPL4Q7Z7J7 247 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 FBXL15Q9H469 300 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 PAM16Q9Y3D7 125 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 RNF114Q9Y508 228 aa12.64□□□□□ -0.39
SQSTM1-213ENST00000510187 ITPR3Q14573 2671 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 J3QLI3 93 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 PSG1P11464 419 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 CEACAM3P40198 252 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 HBBP68871 147 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 LDLRAD2Q5SZI1 272 aa12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 ALKBH7Q9BT30 221 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-213ENST00000510187 IGHV3OR16-10A0A075B7F0 116 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 TRAV40A0A0B4J280 105 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 TCAPO15273 167 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 P01737 135 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 LYZP61626 148 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 TDRG1Q3Y452 100 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 MINOS1Q5TGZ0 78 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 Q86TA4 180 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 BORCS7Q96B45 105 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 RASL11BQ9BPW5 248 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 SLC25A39Q9BZJ4 359 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 HILPDAQ9Y5L2 63 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 MINOS1-NBL1R4GNA1 71 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 ZNF469Q96JG9 3925 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 NPIPB6E9PJ23 425 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 NPFFO15130 113 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 AVPP01185 164 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 C3orf79P0CE67 100 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 CTRLP40313 264 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 PLGLAQ15195 96 aa12.62□□□□□ -0.39
SQSTM1-213ENST00000510187 FLNBO75369 2602 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 IGHV3-21A0A0B4J1V1 117 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 IGHV1-69DA0A0B4J2H0 117 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 IGHV1-69P01742 117 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 SAA4P35542 130 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 DAZAP1Q96EP5 407 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 WNT10AQ9GZT5 417 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 RPH3ALQ9UNE2 315 aa12.61□□□□□ -0.39
SQSTM1-213ENST00000510187 HSBP1O75506 76 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 APELAP0DMC3 54 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 IGHV4-38-2P0DP08 117 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 RBPMS2Q6ZRY4 209 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 LYPD1Q8N2G4 141 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 SHANK2-AS3Q9BTD1 123 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 BAHCC1Q9P281 2608 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 AKAP9Q99996 3911 aa12.6□□□□□ -0.39
SQSTM1-213ENST00000510187 K7EIM0 57 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 TIMM23O14925 209 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 NDUFA3O95167 84 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 IGKV1-17P01599 117 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 PMCHL1Q16048 86 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 DMRTA1Q5VZB9 504 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 LEMD1Q68G75 181 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 C16orf54Q6UWD8 224 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 BRD3OSQ6XYD6 125 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 S100A7AQ86SG5 101 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 NPBQ8NG41 125 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 ABCA1O95477 2261 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 MYO9AB2RTY4 2548 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 H3BRN7 92 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 NBR2O15453 112 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 CNIH1O95406 144 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 RPLP1P05386 114 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 ASPHD1Q5U4P2 390 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 CCDC144NLQ6NUI1 221 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 LINC00322Q6ZN03 302 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 TCF24Q7RTU0 167 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 BPIFA4PQ86YQ2 179 aa12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 GSX1Q9H4S2 264 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-213ENST00000510187 ZANQ9Y493 2812 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 OOSP1A8MZH6 123 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 NTF3P20783 257 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 CAMPP49913 170 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 SPATA45Q537H7 98 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 KLF17Q5JT82 389 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 DYNAPQ8N1N2 210 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 FAM19A2Q8N3H0 131 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 KLHDC1Q8N7A1 406 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 TMEM75Q8N9X5 138 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 OR4F17Q8NGA8 305 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 GTSF1Q8WW33 167 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 ZNF48Q96MX3 618 aaPredicted RBP12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 UQCR10Q9UDW1 63 aa12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 FLNAP21333 2647 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-213ENST00000510187 TRBV19A0A075B6N1 114 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 TRAV30A0A087WSZ9 112 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 C20orf202A1L168 122 aa12.57□□□□□ -0.4
SQSTM1-213ENST00000510187 FAM181BA6NEQ2 426 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 460.2 ms