RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 M0R1B8 84 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 NDUFS7O75251 213 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 IGHV1-46P01743 117 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 LYZP61626 148 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 TM4SF20Q53R12 229 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 ATP1A1-AS1Q5TC04 95 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 PHLDA1Q8WV24 401 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 GTSF1LQ9H1H1 148 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 DKK2Q9UBU2 259 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 TMEM213A2RRL7 107 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 BCL6BQ8N143 479 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 PROCRQ9UNN8 238 aa13.53□□□□□ -0.24
SQSTM1-211ENST00000506690 TRBV19A0A075B6N1 114 aa13.52□□□□□ -0.24
SQSTM1-211ENST00000506690 FTH1P19P0C7X4 201 aa13.52□□□□□ -0.24
SQSTM1-211ENST00000506690 MRPL51Q4U2R6 128 aaKnown RBP13.52□□□□□ -0.24
SQSTM1-211ENST00000506690 C18orf15Q96N68 181 aa13.52□□□□□ -0.24
SQSTM1-211ENST00000506690 WI2-2373I1.2A0A1W2PRP0 233 aa13.52□□□□□ -0.25
SQSTM1-211ENST00000506690 GCSHP23434 173 aa13.52□□□□□ -0.25
SQSTM1-211ENST00000506690 LYZL1Q6UWQ5 148 aa13.52□□□□□ -0.25
SQSTM1-211ENST00000506690 SVIPQ8NHG7 77 aa13.52□□□□□ -0.25
SQSTM1-211ENST00000506690 CD300EQ496F6 205 aaPredicted RBP13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 PSMG4Q5JS54 123 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 SIGLEC15Q6ZMC9 328 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 FOXI2Q6ZQN5 318 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 LINC00311Q8N616 119 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 ICE1Q9Y2F5 2266 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 K7EQM0 130 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 SMAGPQ0VAQ4 97 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 TMEM200BQ69YZ2 307 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 C8orf31Q8N9H6 132 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 C17orf77Q96MU5 243 aa13.51□□□□□ -0.25
SQSTM1-211ENST00000506690 SPENQ96T58 3664 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 IGKV2D-26A0A0A0MRZ7 120 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 ZMAT4Q9H898 229 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 NGBQ9NPG2 151 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 SVILO95425 2214 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 CACNA1HO95180 2353 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 GAGE12HA6NDE8 117 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 SHISA9B4DS77 424 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 FCN3O75636 299 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 THBDP07204 575 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 APELAP0DMC3 54 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 RPL27AP46776 148 aaKnown RBP13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 LYPD1Q8N2G4 141 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 HHLA3Q9XRX5 114 aa13.5□□□□□ -0.25
SQSTM1-211ENST00000506690 MC5RP33032 325 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 BMI1P35226 326 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 CHAC1Q9BUX1 264 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 SPANXB1Q9NS25 103 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 K7ERJ3 54 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 NPYP01303 97 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 C8orf49Q96NF6 230 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 SCNM1Q9BWG6 230 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 TMEM133Q9H2Q1 129 aa13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 TSSC4Q9Y5U2 329 aaPredicted RBP13.49□□□□□ -0.25
SQSTM1-211ENST00000506690 F8W1H4 67 aa13.48□□□□□ -0.25
SQSTM1-211ENST00000506690 SPATA25Q9BR10 227 aa13.48□□□□□ -0.25
SQSTM1-211ENST00000506690 TM2D2Q9BX73 214 aa13.48□□□□□ -0.25
SQSTM1-211ENST00000506690 ZNF318Q5VUA4 2279 aa13.48□□□□□ -0.25
SQSTM1-211ENST00000506690 SHANK2-AS3Q9BTD1 123 aa13.48□□□□□ -0.25
SQSTM1-211ENST00000506690 ZFHX4Q86UP3 3567 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 A0A1B0GV72 72 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 VSTM5A8MXK1 200 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 E9PLD3 99 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 K7EM74 188 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 PRB4P10163 310 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 CKS2P33552 79 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 ODF1Q14990 250 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 ZNF562Q6V9R5 426 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 DEFB124Q8NES8 71 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 ATP6V0BQ99437 205 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 LINC01546A6NGU7 62 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 FBLL1A6NHQ2 334 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 SMKR1H3BMG3 65 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 CRYGBP07316 175 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 CCL11P51671 97 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 C3orf36Q3SXR2 165 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 WFDC3Q8IUB2 231 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 TTTY13Q9BZ97 58 aa13.47□□□□□ -0.25
SQSTM1-211ENST00000506690 PLCE1Q9P212 2302 aa13.46□□□□□ -0.25
SQSTM1-211ENST00000506690 H3BRN7 92 aa13.46□□□□□ -0.25
SQSTM1-211ENST00000506690 WFDC2Q14508 124 aa13.46□□□□□ -0.25
SQSTM1-211ENST00000506690 RASL11BQ9BPW5 248 aa13.46□□□□□ -0.25
SQSTM1-211ENST00000506690 ABCA1O95477 2261 aa13.46□□□□□ -0.26
SQSTM1-211ENST00000506690 TRBV25-1A0A075B6N4 114 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 TMSB15BA0A087X1C1 80 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 A0A1W2PRD5 423 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 A0A1W2PRF3 423 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 A0A1W2PRM7 423 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 J3QR89 54 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 ENSAO43768 121 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 IGKV1-17P01599 117 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 CEND1Q8N111 149 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 SPAARA0A1B0GVQ0 90 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 TEX22C9J3V5 150 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 I3L2K1 104 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 M0R3E3 92 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 MRPS12O15235 138 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 PIP4P1Q86T03 277 aa13.45□□□□□ -0.26
SQSTM1-211ENST00000506690 NHP2Q9NX24 153 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms