RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 GAGE12IP0CL82 117 aa10.11□□□□□ -0.79
TRAF4-212ENST00000498540 SPANXN5Q5MJ07 72 aa10.11□□□□□ -0.79
TRAF4-212ENST00000498540 Q5VSD8 79 aa10.11□□□□□ -0.79
TRAF4-212ENST00000498540 CYP2G1PQ6ZSU1 146 aa10.11□□□□□ -0.79
TRAF4-212ENST00000498540 RPUSD4Q96CM3 377 aaKnown RBP10.11□□□□□ -0.79
TRAF4-212ENST00000498540 CIB3Q96Q77 187 aaPredicted RBP10.11□□□□□ -0.79
TRAF4-212ENST00000498540 PARD6GQ9BYG4 376 aaPredicted RBP10.11□□□□□ -0.79
TRAF4-212ENST00000498540 SYNGR2O43760 224 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 ADAP1O75689 374 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 IL5P05113 134 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 SLC25A6P12236 298 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 RAP2BP61225 183 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 RPP30P78346 268 aaKnown RBP10.1□□□□□ -0.79
TRAF4-212ENST00000498540 DIRAS2Q96HU8 199 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 TMPRSS5Q9H3S3 457 aa10.1□□□□□ -0.79
TRAF4-212ENST00000498540 SMCO3A2RU48 225 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 H3BNG1 76 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 HYPMO75409 117 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 RLN2P04090 185 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 OR5G3P0C626 314 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 LINC00869P0C866 280 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 SPCS2Q15005 226 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 GFI1BQ5VTD9 330 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 TMED4Q7Z7H5 227 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 LRRC20Q8TCA0 184 aa10.09□□□□□ -0.79
TRAF4-212ENST00000498540 FAT1Q14517 4588 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 A0A096LPF7 62 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 PIGBOS1A0A0B4J2F0 54 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 MRPS12O15235 138 aaKnown RBP10.08□□□□□ -0.8
TRAF4-212ENST00000498540 SMIM18P0DKX4 95 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 PLP1P60201 277 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 LRTM2Q8N967 370 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 VSIG2Q96IQ7 327 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 C20orf144Q9BQM9 153 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 PGPEP1Q9NXJ5 209 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 STRAPQ9Y3F4 350 aaKnown RBP10.08□□□□□ -0.8
TRAF4-212ENST00000498540 MYCBP2O75592 4640 aa10.08□□□□□ -0.8
TRAF4-212ENST00000498540 FLG2Q5D862 2391 aaPredicted RBP10.08□□□□□ -0.8
TRAF4-212ENST00000498540 VPS13BQ7Z7G8 4022 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 PMS2P5A8MQ11 134 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 SNURFLB1AK76 121 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 SNRPCP09234 159 aaKnown RBP10.07□□□□□ -0.8
TRAF4-212ENST00000498540 VAMP1P23763 118 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 TMEM128Q5BJH2 165 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 PATE2Q6UY27 113 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 Q6ZTI0 123 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 CCDC28AQ8IWP9 274 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 PTTG2Q9NZH5 202 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 RABL2BQ9UNT1 228 aa10.07□□□□□ -0.8
TRAF4-212ENST00000498540 PRAC2D3DTV9 90 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 J3KRW8 73 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 ERVFC1-1P60608 527 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 CDPF1Q6NVV7 123 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 CCDC190Q86UF4 302 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 FRZBQ92765 325 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 ARL6Q9H0F7 186 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 ZNF331Q9NQX6 463 aaPredicted RBP10.06□□□□□ -0.8
TRAF4-212ENST00000498540 RABL2AQ9UBK7 228 aaPredicted RBP10.06□□□□□ -0.8
TRAF4-212ENST00000498540 TNFRSF18Q9Y5U5 241 aa10.06□□□□□ -0.8
TRAF4-212ENST00000498540 SLC17A3O00476 420 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 SIVA1O15304 175 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 CCNKO75909 580 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 HOXB5P09067 269 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 DNAH10OSP0CZ25 163 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 CXCL2P19875 107 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 ANXA7P20073 488 aaKnown RBP10.05□□□□□ -0.8
TRAF4-212ENST00000498540 KRTAP10-1P60331 282 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 LCN15Q6UWW0 184 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 ARV1Q9H2C2 271 aa10.05□□□□□ -0.8
TRAF4-212ENST00000498540 SRRM2Q9UQ35 2752 aaKnown RBP10.04□□□□□ -0.8
TRAF4-212ENST00000498540 TRAV12-3A0A0B4J271 114 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 LINC00854A0A1B0GVQ3 168 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 H3BTX0 84 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 EREGO14944 169 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 RRAS2P62070 204 aaPredicted RBP10.04□□□□□ -0.8
TRAF4-212ENST00000498540 SELENOTP62341 195 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 PPP1R1AQ13522 171 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 ZBTB8BQ8NAP8 495 aaPredicted RBP10.04□□□□□ -0.8
TRAF4-212ENST00000498540 SLC50A1Q9BRV3 221 aa10.04□□□□□ -0.8
TRAF4-212ENST00000498540 RSL24D1Q9UHA3 163 aaKnown RBP10.04□□□□□ -0.8
TRAF4-212ENST00000498540 NXPH4O95158 308 aa10.03□□□□□ -0.8
TRAF4-212ENST00000498540 SFT2D2O95562 160 aa10.03□□□□□ -0.8
TRAF4-212ENST00000498540 POLR2GP62487 172 aaKnown RBP eCLIP10.03□□□□□ -0.8
TRAF4-212ENST00000498540 SLC38A11Q08AI6 406 aa10.03□□□□□ -0.8
TRAF4-212ENST00000498540 DAZ2Q13117 558 aaKnown RBP10.03□□□□□ -0.8
TRAF4-212ENST00000498540 SOSTQ9BQB4 213 aa10.03□□□□□ -0.8
TRAF4-212ENST00000498540 PSENENQ9NZ42 101 aa10.03□□□□□ -0.8
TRAF4-212ENST00000498540 TRGV2A0A075B6R0 118 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 SMR3BP02814 79 aaPredicted RBP10.02□□□□□ -0.81
TRAF4-212ENST00000498540 CT45A10P0DMU9 189 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 ID3Q02535 119 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 MORN5Q5VZ52 161 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 LINC00305Q7Z4B0 112 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 S100A7AQ86SG5 101 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 DYNC2LI1Q8TCX1 351 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 TRIM63Q969Q1 353 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 CCDC59Q9P031 241 aaKnown RBP10.02□□□□□ -0.81
TRAF4-212ENST00000498540 MDFICQ9P1T7 246 aa10.02□□□□□ -0.81
TRAF4-212ENST00000498540 A0A087WTM6 91 aa10.01□□□□□ -0.81
TRAF4-212ENST00000498540 K7EPK0 472 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms