RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 RGPD8O14715 1765 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-220ENST00000492859 RGPD5Q99666 1765 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 DLC1Q96QB1 1528 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV1OR15-1A0A075B7D0 117 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 A0A1B0GTL3 188 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 C17orf112F2Z3M2 114 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 K7EM74 188 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 SOCS2O14508 198 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 MGST3O14880 152 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV4-39P01824 125 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV3-43DP0DP04 118 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 RNASE4P34096 147 aaKnown RBP3.13□□□□□ -1.91
BRCA1-220ENST00000492859 SSR2P43308 183 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 LINC00310P59036 64 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 PYDC2Q56P42 97 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 ZNF322Q6U7Q0 402 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-220ENST00000492859 C7orf65Q6ZTY9 151 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 ZNF645Q8N7E2 425 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 C15orf53Q8NAA6 179 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 CMTM2Q8TAZ6 248 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 OPRPNQ99935 248 aaPredicted RBP3.13□□□□□ -1.91
BRCA1-220ENST00000492859 SCN9AQ15858 1988 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 C10orf71Q711Q0 1435 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 CLTCL1P53675 1640 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 ADCY10Q96PN6 1610 aa3.13□□□□□ -1.91
BRCA1-220ENST00000492859 IGLV3-10A0A075B6K4 115 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 IGLV5-45A0A087WSX0 123 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 IGKV6D-21A0A0A0MT36 114 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV3-38A0A0C4DH36 116 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV4-38-2P0DP08 117 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 C17orf58Q2M2W7 97 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 ZNF876PQ49A33 203 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 FAM78AQ5JUQ0 283 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 ADAMTSL4-AS1Q5T5F5 129 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 LCE5AQ5TCM9 118 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 TMEM61Q8N0U2 210 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 OR8B3Q8NGG8 313 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 FLVCR1-AS1Q8TAF5 88 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 FGF13Q92913 245 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 UPK3BQ9BT76 320 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 C6orf106Q9H6K1 298 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-220ENST00000492859 ARHGEF28Q8N1W1 1705 aaKnown RBP3.12□□□□□ -1.91
BRCA1-220ENST00000492859 PTPRBP23467 1997 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 DSCAML1Q8TD84 2053 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 FXYD6-FXYD2A0A087WZ82 144 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 A0A0G2JND7 137 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 A0A1B0GVT2 93 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 C9JCJ5 164 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 SLC25A14O95258 325 aaPredicted RBP3.12□□□□□ -1.91
BRCA1-220ENST00000492859 CCL20P78556 96 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 MPV17LQ2QL34 196 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 GUSBP11Q6P575 273 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 IGFL3Q6UXB1 125 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 COMMD6Q7Z4G1 85 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 NFE4Q86UQ8 179 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 DEFB107AQ8IZN7 70 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 GTSF1Q8WW33 167 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 DIRC1Q969H9 104 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 FXYD6Q9H0Q3 95 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 CCL28Q9NRJ3 127 aa3.12□□□□□ -1.91
BRCA1-220ENST00000492859 CEP170Q5SW79 1584 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 NUP98P52948 1817 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IGLV5-52A0A0A0MRZ9 124 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IGKV6-21A0A0C4DH24 114 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 TRGV8A0A0C4DH27 118 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IGKV1-12A0A0C4DH73 117 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 MDFIC2A0A1B0GVS7 189 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 K7ESM1 405 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 ATOX1O00244 68 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 TIMM17BO60830 172 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IGKV1D-12P01611 117 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IGHV3-7P01780 117 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 PRM2P04554 102 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 PI3P19957 117 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 CXCL6P80162 114 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 LAIR2Q6ISS4 152 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 REG3GQ6UW15 175 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 C18orf65Q6ZTR6 163 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 CEND1Q8N111 149 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 CYTL1Q9NRR1 136 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 IL36BQ9NZH7 164 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 CLTCQ00610 1675 aaKnown RBP3.11□□□□□ -1.91
BRCA1-220ENST00000492859 PREX1Q8TCU6 1659 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 ANKRD36CQ5JPF3 1778 aa3.11□□□□□ -1.91
BRCA1-220ENST00000492859 ARFGEF1Q9Y6D6 1849 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 KLF18A0A0U1RQI7 1052 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 UBE2L5PA0A1B0GUS4 154 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 SNRPGP15A8MWD9 76 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 ZNF324O75467 553 aaPredicted RBP3.1□□□□□ -1.91
BRCA1-220ENST00000492859 IGKV1-16P04430 117 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 S100A4P26447 101 aaKnown RBP3.1□□□□□ -1.91
BRCA1-220ENST00000492859 UBE2L3P68036 154 aaKnown RBP3.1□□□□□ -1.91
BRCA1-220ENST00000492859 INSL4Q14641 139 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 TWIST1Q15672 202 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 SCXQ7RTU7 201 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 SIGLECL1Q8N7X8 197 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 CLDND2Q8NHS1 167 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 OR8B2Q96RD0 313 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 SCRT1Q9BWW7 348 aa3.1□□□□□ -1.91
BRCA1-220ENST00000492859 NPCDR1Q9BY65 106 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms