RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 HYLS1Q96M11 299 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 CCDC115Q96NT0 180 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 GGACTQ9BVM4 153 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 TAF9BQ9HBM6 251 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 MED31Q9Y3C7 131 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 SNURFQ9Y675 71 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 FRMPD1Q5SYB0 1578 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 NISCHQ9Y2I1 1504 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 NUP98P52948 1817 aa1.5□□□□□ -2.17
XRN1-213ENST00000489241 LAMB2P55268 1798 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 UBR2Q8IWV8 1755 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 RTL9Q8NET4 1388 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 ADGBQ8N7X0 1667 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 IGKV3-7A0A075B6H7 116 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 A0A087WSZ3 146 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 IGKV2-40A0A087WW87 121 aaPredicted RBP1.49□□□□□ -2.17
XRN1-213ENST00000489241 A0A087WX48 190 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 KPNA4O00629 521 aaPredicted RBP1.49□□□□□ -2.17
XRN1-213ENST00000489241 FAM107AO95990 144 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 IGKV2D-40P01614 121 aaPredicted RBP1.49□□□□□ -2.17
XRN1-213ENST00000489241 CD2P06729 351 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 FABP2P12104 132 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 RPS3P23396 243 aaKnown RBP eCLIP1.49□□□□□ -2.17
XRN1-213ENST00000489241 C2orf82Q6UX34 121 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 ZNF833PQ6ZTB9 187 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 FAM216BQ8N7L0 139 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 OR9Q1Q8NGQ5 310 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 Q8TAT8 98 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 C4orf3Q8WVX3 66 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 MUCL1Q96DR8 90 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 TP53RKQ96S44 253 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 GINS2Q9Y248 185 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 TNS3Q68CZ2 1445 aa1.49□□□□□ -2.17
XRN1-213ENST00000489241 PCDH15Q96QU1 1955 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 ALPK2Q86TB3 2170 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 LOC110117498A0A087WWA1 95 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 OR2T8A6NH00 312 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 KRTAP26-1Q6PEX3 210 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 TMEM14EPQ6UXP3 125 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 SKA2Q8WVK7 121 aaPredicted RBP1.48□□□□□ -2.17
XRN1-213ENST00000489241 PATE1Q8WXA2 126 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 TCEAL2Q9H3H9 227 aaPredicted RBP1.48□□□□□ -2.17
XRN1-213ENST00000489241 CDC42SE1Q9NRR8 79 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 TAS2R7Q9NYW3 318 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 TRAPPC2LQ9UL33 140 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 BCL9O00512 1426 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 MED12LQ86YW9 2145 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 NUP210LQ5VU65 1888 aa1.48□□□□□ -2.17
XRN1-213ENST00000489241 DIDO1Q9BTC0 2240 aaKnown RBP1.47□□□□□ -2.17
XRN1-213ENST00000489241 IGHV1-58A0A0C4DH39 117 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 hDV103S1A0JD37 113 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 CCL16O15467 120 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 ERC2-IT1O76042 136 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 MT-ND6P03923 174 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 LYNX1P0DP58 116 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 SDC2P34741 201 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 KRTAP21-3Q3LHN1 58 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 Q6ZSA8 131 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 ARPINQ7Z6K5 226 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 C10orf105Q8TEF2 133 aa1.47□□□□□ -2.17
XRN1-213ENST00000489241 TRAV27A0A087WT01 109 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 LRRC18Q8N456 261 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 TMEM35BQ8NCS4 154 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 DIRC1Q969H9 104 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 C19orf12Q9NSK7 152 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 HSPB11Q9Y547 144 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 INTS1Q8N201 2190 aaKnown RBP1.46□□□□□ -2.18
XRN1-213ENST00000489241 EML6Q6ZMW3 1958 aa1.46□□□□□ -2.18
XRN1-213ENST00000489241 KDM6AO15550 1401 aaPredicted RBP1.46□□□□□ -2.18
XRN1-213ENST00000489241 PIK3C2AO00443 1686 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 OTOGLQ3ZCN5 2332 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 N4BP2Q86UW6 1770 aaPredicted RBP1.45□□□□□ -2.18
XRN1-213ENST00000489241 M0R2N4 97 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 GEMIN2O14893 280 aaKnown RBP1.45□□□□□ -2.18
XRN1-213ENST00000489241 INE1O15225 51 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 LYRM1O43325 122 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 CXCL8P10145 99 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 LINC00305Q7Z4B0 112 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 PYDC1Q8WXC3 89 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 LINC00052Q96N35 136 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 ARFGEF3Q5TH69 2177 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 RFX7Q2KHR2 1363 aa1.45□□□□□ -2.18
XRN1-213ENST00000489241 ADGRB2O60241 1585 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 TRBV7-6A0A0J9YX20 115 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 TRBV6-4A0A1B0GX49 114 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 C5orf67F2Z3F1 127 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 NDUFA6P56556 154 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 MPV17LQ2QL34 196 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 FAM74A1Q5RGS3 127 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 TEX29Q8N6K0 151 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 OR5H6Q8NGV6 325 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 OBSCN-AS1Q96MR7 158 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 MCEEQ96PE7 176 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 NIT2Q9NQR4 276 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 ORMDL1Q9P0S3 153 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 ZFP30Q9Y2G7 519 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 MYOFQ9NZM1 2061 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 MED13Q9UHV7 2174 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 MUC6Q6W4X9 2439 aa1.44□□□□□ -2.18
XRN1-213ENST00000489241 KIAA1107Q9UPP5 1409 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms