RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C5orf64Q2M2E5 130 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 C16orf54Q6UWD8 224 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 TIMD4Q96H15 378 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 FANCD2OSQ96PS1 177 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 TPPP3Q9BW30 176 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.11□□□□□ -0.15
VIM-206ENST00000487938 WI2-2373I1.2A0A1W2PRP0 233 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 TSPOP30536 169 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 CEACAM3P40198 252 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 FBXL19-AS1Q494R0 122 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 DYNAPQ8N1N2 210 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 CHCHD1Q96BP2 118 aaKnown RBP14.11□□□□□ -0.15
VIM-206ENST00000487938 C8orf49Q96NF6 230 aa14.11□□□□□ -0.15
VIM-206ENST00000487938 TIMM8BQ9Y5J9 83 aaPredicted RBP14.11□□□□□ -0.15
VIM-206ENST00000487938 NBASA2RRP1 2371 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 FAM162BQ5T6X4 162 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 RNF24Q9Y225 148 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 ZFP30Q9Y2G7 519 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 GOLT1BQ9Y3E0 138 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 SPTA1P02549 2419 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 TRBV6-1A0A0K0K1D8 114 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 A0A1B0GUT8 65 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 K7EQM0 130 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 LEPROTL1O95214 131 aa14.1□□□□□ -0.15
VIM-206ENST00000487938 HINT1P49773 126 aaPredicted RBP14.1□□□□□ -0.15
VIM-206ENST00000487938 ADORA2A-AS1P86434 159 aa14.09□□□□□ -0.15
VIM-206ENST00000487938 MCRIP2Q9BUT9 160 aaKnown RBP14.09□□□□□ -0.15
VIM-206ENST00000487938 OR4C46A6NHA9 309 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 PRTN3P24158 256 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 MFAP4P55083 255 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 NDPQ00604 133 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 NHLH1Q02575 133 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 LYPD1Q8N2G4 141 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 TMUB1Q9BVT8 246 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 TP73-AS1Q9UF72 201 aa14.08□□□□□ -0.15
VIM-206ENST00000487938 HRNRQ86YZ3 2850 aaPredicted RBP14.08□□□□□ -0.16
VIM-206ENST00000487938 IGLV11-55A0A075B6I3 123 aa14.08□□□□□ -0.16
VIM-206ENST00000487938 ODF3BA8MYP8 253 aa14.08□□□□□ -0.16
VIM-206ENST00000487938 F8W735 103 aaPredicted RBP14.08□□□□□ -0.16
VIM-206ENST00000487938 SYS1-DBNDD2H3BUS1 97 aa14.08□□□□□ -0.16
VIM-206ENST00000487938 KLRB1Q12918 225 aa14.08□□□□□ -0.16
VIM-206ENST00000487938 TMSB15BA0A087X1C1 80 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 H0Y8G0 127 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 M0R1W7 72 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 ARPC1AQ92747 370 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 NDUFB8O95169 186 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 ZNF562Q6V9R5 426 aa14.07□□□□□ -0.16
VIM-206ENST00000487938 TRAV30A0A087WSZ9 112 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 hDV102S1A0JD36 115 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 RIGQ13278 110 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 VMO1Q7Z5L0 202 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 ASH1LQ9NR48 2969 aaKnown RBP14.06□□□□□ -0.16
VIM-206ENST00000487938 IGHV3OR16-8A0A075B7F1 116 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 OR2T8A6NH00 312 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 GAGE1Q13065 139 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 AAMDCQ9H7C9 122 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 C1RLQ9NZP8 487 aa14.06□□□□□ -0.16
VIM-206ENST00000487938 NPIPB5A8MRT5 1133 aa14.05□□□□□ -0.16
VIM-206ENST00000487938 CRXO43186 299 aaPredicted RBP14.05□□□□□ -0.16
VIM-206ENST00000487938 IGFL4Q6B9Z1 124 aa14.05□□□□□ -0.16
VIM-206ENST00000487938 Q6ZVH6 145 aa14.05□□□□□ -0.16
VIM-206ENST00000487938 C21orf62Q9NYP8 219 aa14.05□□□□□ -0.16
VIM-206ENST00000487938 MRPS16Q9Y3D3 137 aaKnown RBP14.05□□□□□ -0.16
VIM-206ENST00000487938 IGHV3-35A0A0C4DH35 117 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 C20orf202A1L168 122 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 C11orf71Q6IPW1 123 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 TTC9CQ8N5M4 171 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 IGKV2-40A0A087WW87 121 aaPredicted RBP14.04□□□□□ -0.16
VIM-206ENST00000487938 MUC21A0A0G2JKD1 596 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 MUC21A0A140T8X8 626 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 SERTM2A0A1B0GWG4 89 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 IGKV2D-40P01614 121 aaPredicted RBP14.04□□□□□ -0.16
VIM-206ENST00000487938 ZFP36P26651 326 aaKnown RBP14.04□□□□□ -0.16
VIM-206ENST00000487938 MUC21Q5SSG8 566 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 MED13LQ71F56 2210 aa14.04□□□□□ -0.16
VIM-206ENST00000487938 WNK2Q9Y3S1 2297 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 CT45A10P0DMU9 189 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 NEU4Q8WWR8 484 aaPredicted RBP14.03□□□□□ -0.16
VIM-206ENST00000487938 IGF2RP11717 2491 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 NDUFS7O75251 213 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 CSN1S1P47710 185 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 PMCHL2Q9BQD1 86 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 MAP1LC3CQ9BXW4 147 aa14.03□□□□□ -0.16
VIM-206ENST00000487938 FOSL1P15407 271 aa14.02□□□□□ -0.16
VIM-206ENST00000487938 LYZL1Q6UWQ5 148 aa14.02□□□□□ -0.16
VIM-206ENST00000487938 TMEM213A2RRL7 107 aa14.02□□□□□ -0.17
VIM-206ENST00000487938 TMEM189A5PLL7 270 aa14.02□□□□□ -0.17
VIM-206ENST00000487938 OR5AL1P0C617 328 aa14.02□□□□□ -0.17
VIM-206ENST00000487938 TMEM11P17152 192 aa14.02□□□□□ -0.17
VIM-206ENST00000487938 PDE6HQ13956 83 aa14.02□□□□□ -0.17
VIM-206ENST00000487938 ATRXP46100 2492 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 SH2D1AO60880 128 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 CTSGP08311 255 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 FAM106CPP0CH98 169 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 EGR2P11161 476 aaPredicted RBP14.01□□□□□ -0.17
VIM-206ENST00000487938 HLA-DMBP28068 263 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 FAM106AQ4KMX7 169 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 DMRTA1Q5VZB9 504 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 UNQ5815/PRO19632Q6UWF5 114 aa14.01□□□□□ -0.17
VIM-206ENST00000487938 S100A7AQ86SG5 101 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms