RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 A0A1B0GXF2 115 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 GDF5OSQ5U4N7 250 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 H7C1H1 209 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PPIFP30405 207 aaKnown RBP12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 LTBRP36941 435 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 FOXI2Q6ZQN5 318 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 ARRDC1-AS1Q9H2J1 176 aa12.31□□□□□ -0.44
HLA-DQB1-209ENST00000487676 WFDC2Q14508 124 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 C12orf74Q32Q52 190 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 FREM1Q5H8C1 2179 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TRAV26-1A0A087WT03 109 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 C9orf172C9J069 976 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PRTN3P24158 256 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGHV1-18A0A0C4DH31 117 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 GTSF1Q8WW33 167 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 WFDC12Q8WWY7 111 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 KIR2DL4Q99706 377 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TMEM133Q9H2Q1 129 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 SPANXA1Q9NS26 97 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 S4R3C0 116 aa12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 APOBEC3AP31941 199 aaPredicted RBP12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 MAFAQ8NHW3 353 aaPredicted RBP12.3□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TNFRSF6BO95407 300 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 MORN5Q5VZ52 161 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 Q6ZR03 302 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 MBD6Q96DN6 1003 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGLL5B9A064 214 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 THAP8Q8NA92 274 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 BRWD1-AS2P59051 145 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 C21orf62Q9NYP8 219 aa12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 YLPM1P49750 1951 aaKnown RBP12.29□□□□□ -0.44
HLA-DQB1-209ENST00000487676 A0A1W2PPI3 338 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 ZNF503Q96F45 646 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGKV2-40A0A087WW87 121 aaPredicted RBP12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 M0R381 172 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGKV2D-40P01614 121 aaPredicted RBP12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 FXYD2P54710 66 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TDHQ8IZJ6 230 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 C16orf92Q96LL3 132 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 PRSS47A8MTI9 375 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 HIGD1BQ9P298 99 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 CADP27708 2225 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TRBV25-1A0A075B6N4 114 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 NPYP01303 97 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 CRYBA4P53673 196 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 WT1-ASQ06250 92 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 RRN3P1Q2M238 152 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 C10orf126Q8N4M7 172 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 SPRR3Q9UBC9 169 aa12.28□□□□□ -0.44
HLA-DQB1-209ENST00000487676 IGKV1OR2-108A0A075B7D4 117 aa12.27□□□□□ -0.44
HLA-DQB1-209ENST00000487676 CCDC144NLQ6NUI1 221 aa12.27□□□□□ -0.44
HLA-DQB1-209ENST00000487676 LCNL1Q6ZST4 164 aa12.27□□□□□ -0.44
HLA-DQB1-209ENST00000487676 KLF12Q9Y4X4 402 aa12.27□□□□□ -0.44
HLA-DQB1-209ENST00000487676 TRBV20-1A0A075B6N2 111 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 C17orf58Q2M2W7 97 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 FAM120AOSQ5T036 256 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 JMJD8Q96S16 334 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 C16orf97H3BN30 126 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 Q8TCH9 128 aa12.27□□□□□ -0.45
HLA-DQB1-209ENST00000487676 IGHV3-35A0A0C4DH35 117 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 SRRM4A7MD48 611 aaKnown RBP12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 GAGE5Q13069 117 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 GAGE6Q13070 117 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 SRSF6Q13247 344 aaKnown RBP12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 C9orf106Q8NAJ2 232 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 OR10J6PQ8NGY7 276 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 METTL26Q96S19 204 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 TSPAN13O95857 204 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 SHANK2-AS3Q9BTD1 123 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 PLSCR4Q9NRQ2 329 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 GOLGB1Q14789 3259 aaKnown RBP12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 SHISA9B4DS77 424 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 IGKV3-15P01624 115 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 TRBV19A0A075B6N1 114 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 TMEM14CQ9P0S9 112 aa12.26□□□□□ -0.45
HLA-DQB1-209ENST00000487676 LINC01549A6NIU2 74 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 NTN3O00634 580 aaPredicted RBP12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 NKX2-8O15522 239 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 PDE6HQ13956 83 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 MRPL35Q9NZE8 188 aaKnown RBP12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 ERG28Q9UKR5 140 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 TNCP24821 2201 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 SSBP2P81877 361 aaPredicted RBP12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 PATE2Q6UY27 113 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 C11orf53Q8IXP5 236 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 ECSCRQ19T08 205 aa12.25□□□□□ -0.45
HLA-DQB1-209ENST00000487676 DDB2Q92466 427 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 GAFA1Q96PS6 74 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 DEFB123Q8N688 67 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 Q8N8P6 123 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 ZNRD1Q9P1U0 126 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 Q8TAT8 98 aa12.24□□□□□ -0.45
HLA-DQB1-209ENST00000487676 DAZAP2Q15038 168 aaPredicted RBP12.23□□□□□ -0.45
HLA-DQB1-209ENST00000487676 C8orf86Q6ZUL3 223 aa12.23□□□□□ -0.45
HLA-DQB1-209ENST00000487676 Q8N7P7 452 aa12.23□□□□□ -0.45
HLA-DQB1-209ENST00000487676 MYMXA0A1B0GTQ4 84 aa12.23□□□□□ -0.45
HLA-DQB1-209ENST00000487676 IGHV1-46P01743 117 aa12.23□□□□□ -0.45
HLA-DQB1-209ENST00000487676 TCTEX1D4Q5JR98 221 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms