RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 AKR1C1Q04828 323 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 CNPY1Q3B7I2 92 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 SAPCD1Q5SSQ6 148 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 ACOT7LQ6ZUV0 252 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 OR8I2Q8N0Y5 310 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 CSNK1G2-AS1Q8NCQ2 148 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 BPIFCQ8NFQ6 507 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 OR4D5Q8NGN0 318 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 LINC00052Q96N35 136 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 SDHCQ99643 169 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 HRH4Q9H3N8 390 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 CLEC5AQ9NY25 188 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 PSENENQ9NZ42 101 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 NDUFA13Q9P0J0 144 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 TBC1D24Q9ULP9 559 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 SLC45A2Q9UMX9 530 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 HLA-DRB4X5D2U9 266 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 PLECQ15149 4684 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 TRAV34A0A0B4J273 112 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SMCO3A2RU48 225 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 C11orf94C9JXX5 98 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 ISLRO14498 428 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SOCS3O14543 225 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 RBMY1A1P0DJD3 496 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 RBMY1CP0DJD4 496 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 ORM2P19652 201 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 GALR1P47211 349 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 MEOX2P50222 304 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 TCTAP57738 103 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 RBMY1FQ15415 496 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 NDUFA5Q16718 116 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 IAH1Q2TAA2 248 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SPATA31B1PQ5VZV4 182 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 FOXI2Q6ZQN5 318 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 TMEM144Q7Z5S9 345 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 OR1B1Q8NGR6 318 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 C2CD4CQ8TF44 421 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SMIM8Q96KF7 97 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 GPR82Q96P67 336 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 TMEM147Q9BVK8 224 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 C20orf85Q9H1P6 137 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SAV1Q9H4B6 383 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SLC25A22Q9H936 323 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 XCL2Q9UBD3 114 aa4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 EPPK1P58107 5090 aaKnown RBP4.91□□□□□ -1.62
CCDC88A-213ENST00000476903 SERTM2A0A1B0GWG4 89 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 A4D1N5 150 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF98A6NK75 572 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 LYRM1O43325 122 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 IL5P05113 134 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 TAS2R30P59541 319 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 DLK1P80370 383 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 GDF5OSQ5U4N7 250 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 LGALS9CQ6DKI2 356 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 EBLN2Q6P2I7 272 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 CYP2G1PQ6ZSU1 146 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 S100A7AQ86SG5 101 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC51BQ86UW2 128 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 OR10P1Q8NGE3 313 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 MITD1Q8WV92 249 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC25A32Q9H2D1 315 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 RPRMQ9NS64 109 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 GSKIPQ9P0R6 139 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 MGAT4CQ9UBM8 478 aa4.9□□□□□ -1.63
CCDC88A-213ENST00000476903 TRAV10A0A0B4J240 114 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 SMIM9A6NGZ8 99 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 PMS2P5A8MQ11 134 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 IGLL5B9A064 214 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 FNDC10F2Z333 226 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 H3BRN7 92 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 PLA2G10O15496 165 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 HYPMO75409 117 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 IGKV3-20P01619 116 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 TCRBP04435 133 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 METTL15P1P0C7V9 234 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 LINC00869P0C866 280 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 M6PRP20645 277 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 GATA2P23769 480 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 HLA-DMBP28068 263 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 PAX9P55771 341 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 DEFB1P60022 68 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 PLP1P60201 277 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 RRAS2P62070 204 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 SELENOTP62341 195 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF846Q147U1 533 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 TMEM14EPQ6UXP3 125 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 ZNF705AQ6ZN79 300 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 TMEM182Q6ZP80 229 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 Q6ZTC4 211 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 OR4B1Q8NGF8 309 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 RSG1Q9BU20 258 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 CCDC32Q9BV29 185 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 TPPP3Q9BW30 176 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC25A39Q9BZJ4 359 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 NPVFQ9HCQ7 196 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 RNF24Q9Y225 148 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 HIGD1AQ9Y241 93 aa4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 RCL1Q9Y2P8 373 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-213ENST00000476903 BIRC6Q9NR09 4857 aa4.88□□□□□ -1.63
CCDC88A-213ENST00000476903 A0A0J9YX75 114 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms