RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 FAM25AB3EWG3 89 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 FAM25CB3EWG5 89 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 FAM25GB3EWG6 89 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 IAPPP10997 89 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 CCDC28AQ8IWP9 274 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 OR1S1Q8NH92 325 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 SHPKQ9UHJ6 478 aa12.44□□□□□ -0.42
SHH-205ENST00000472308 RAB11AP62491 216 aa12.43□□□□□ -0.42
SHH-205ENST00000472308 DAZ2Q13117 558 aaKnown RBP12.43□□□□□ -0.42
SHH-205ENST00000472308 FAM30AQ9NZY2 134 aa12.43□□□□□ -0.42
SHH-205ENST00000472308 RPL7P18124 248 aaKnown RBP12.42□□□□□ -0.42
SHH-205ENST00000472308 EXTL2Q9UBQ6 330 aa12.42□□□□□ -0.42
SHH-205ENST00000472308 PAIP2BQ9ULR5 123 aaKnown RBP12.42□□□□□ -0.42
SHH-205ENST00000472308 PITX3O75364 302 aa12.41□□□□□ -0.42
SHH-205ENST00000472308 Q9H521 79 aa12.41□□□□□ -0.42
SHH-205ENST00000472308 MSRB1Q9NZV6 116 aa12.41□□□□□ -0.42
SHH-205ENST00000472308 TRGV2A0A075B6R0 118 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 IGLV5-52A0A0A0MRZ9 124 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 PRAC2D3DTV9 90 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 MRPS12O15235 138 aaKnown RBP12.4□□□□□ -0.42
SHH-205ENST00000472308 S100A7P31151 101 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 VBP1P61758 197 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 SYT8Q8NBV8 401 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 LINC00467Q9BRT7 94 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 HIGD1AQ9Y241 93 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 ICOSQ9Y6W8 199 aa12.4□□□□□ -0.42
SHH-205ENST00000472308 AKR1C4P17516 323 aa12.39□□□□□ -0.43
SHH-205ENST00000472308 LYPD5Q6UWN5 251 aa12.39□□□□□ -0.43
SHH-205ENST00000472308 C11orf72Q8NBR9 251 aa12.39□□□□□ -0.43
SHH-205ENST00000472308 KCNIP3Q9Y2W7 256 aa12.39□□□□□ -0.43
SHH-205ENST00000472308 LINC00854A0A1B0GVQ3 168 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 DISC1C4P0D8 188 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 ZNF324O75467 553 aaPredicted RBP12.38□□□□□ -0.43
SHH-205ENST00000472308 RAP2BP61225 183 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 AKR1C1Q04828 323 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 ACOT7LQ6ZUV0 252 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 CCDC190Q86UF4 302 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 LRRC20Q8TCA0 184 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 ZNF331Q9NQX6 463 aaPredicted RBP12.38□□□□□ -0.43
SHH-205ENST00000472308 GSN-AS1Q9NRJ2 163 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 LY96Q9Y6Y9 160 aa12.38□□□□□ -0.43
SHH-205ENST00000472308 TRAV12-3A0A0B4J271 114 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 LRCOL1A6NCL2 159 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 PMS2P5A8MQ11 134 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 J3KRW8 73 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 PAX4O43316 350 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 CYP2G1PQ6ZSU1 146 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 WFDC10BQ8IUB3 73 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 OR51S1Q8NGJ8 323 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 PYGO2Q9BRQ0 406 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 FUT9Q9Y231 359 aa12.37□□□□□ -0.43
SHH-205ENST00000472308 TRAV9-2A0A087WT02 112 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 NPIPB6E9PJ23 425 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 HYPMO75409 117 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 PLA2G1BP04054 148 aaKnown RBP12.36□□□□□ -0.43
SHH-205ENST00000472308 SNRPCP09234 159 aaKnown RBP12.36□□□□□ -0.43
SHH-205ENST00000472308 LINC00869P0C866 280 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 PLP1P60201 277 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 SSBP1Q04837 148 aaKnown RBP12.36□□□□□ -0.43
SHH-205ENST00000472308 MZT2AQ6P582 158 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 ZBTB8BQ8NAP8 495 aaPredicted RBP12.36□□□□□ -0.43
SHH-205ENST00000472308 DEFB104AQ8WTQ1 72 aa12.36□□□□□ -0.43
SHH-205ENST00000472308 NTN5Q8WTR8 489 aaPredicted RBP12.36□□□□□ -0.43
SHH-205ENST00000472308 RNF213Q63HN8 5207 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 TRGV1A0A0A0MS02 117 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 IL5P05113 134 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 OR5G3P0C626 314 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 CT45A10P0DMU9 189 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 CXCL2P19875 107 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 PATE2Q6UY27 113 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 LINC00528Q8N1L1 170 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 ZNF431Q8TF32 576 aaPredicted RBP12.35□□□□□ -0.43
SHH-205ENST00000472308 C15orf40Q8WUR7 153 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 PRRT1Q99946 306 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 FUNDC2Q9BWH2 189 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 PLA2G2DQ9UNK4 145 aa12.35□□□□□ -0.43
SHH-205ENST00000472308 SLC17A3O00476 420 aa12.34□□□□□ -0.43
SHH-205ENST00000472308 AKAIN1P0CW23 69 aa12.34□□□□□ -0.43
SHH-205ENST00000472308 TEPPQ6URK8 271 aa12.34□□□□□ -0.43
SHH-205ENST00000472308 LCN15Q6UWW0 184 aa12.34□□□□□ -0.43
SHH-205ENST00000472308 H3BP45 60 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 K7EP13 123 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 WRBO00258 174 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 SPINK4O60575 86 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 IGHV3-53P01767 116 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 CRYBA4P53673 196 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 SRPXP78539 464 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 CLVS1Q8IUQ0 354 aaPredicted RBP12.33□□□□□ -0.44
SHH-205ENST00000472308 ZNF680Q8NEM1 530 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 SMIM4Q8WVI0 70 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 ST6GAL2Q96JF0 529 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 ODF3Q96PU9 254 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 SLC50A1Q9BRV3 221 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 MIXL1Q9H2W2 232 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 PRO0255Q9UI72 69 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 KLF12Q9Y4X4 402 aa12.33□□□□□ -0.44
SHH-205ENST00000472308 H3BTX0 84 aa12.32□□□□□ -0.44
SHH-205ENST00000472308 SPANXN5Q5MJ07 72 aa12.32□□□□□ -0.44
SHH-205ENST00000472308 AP3S1Q92572 193 aa12.32□□□□□ -0.44
SHH-205ENST00000472308 CIB3Q96Q77 187 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms