RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044		F8W1H4	67 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	IFNA14	P01570	189 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	RPL19	P84098	196 aa	Known RBP	0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	ARPIN	Q7Z6K5	226 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	TMED4	Q7Z7H5	227 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	PPTC7	Q8NI37	304 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	RAB37	Q96AX2	223 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	CHCHD1	Q96BP2	118 aa	Known RBP	0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	MALSU1	Q96EH3	234 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	HYLS1	Q96M11	299 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	PAIP2	Q9BPZ3	127 aa	Known RBP	0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	ZGRF1	Q86YA3	2104 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044	TET1	Q8NFU7	2136 aa		0.65	□□□□□ -2.31
PTCD3-209	ENST00000472044		H3BRM9	83 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	OGN	P20774	298 aa	Known RBP	0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	ARPP19	P56211	112 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	POU6F1	Q14863	301 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	LINC00575	Q6W349	94 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	KRTAP19-3	Q7Z4W3	81 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	NUP35	Q8NFH5	326 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	OR10AG1	Q8NH19	301 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	OR13C6P	Q8NH95	151 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	ZHX1-C8orf76	Q96EF9	292 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	ZC2HC1A	Q96GY0	325 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	GGACT	Q9BVM4	153 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	RTL8A	Q9BWD3	113 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	CACYBP	Q9HB71	228 aa	Known RBP	0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	PTPRD	P23468	1912 aa		0.64	□□□□□ -2.31
PTCD3-209	ENST00000472044	IFNA4	P05014	189 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	CXCL1	P09341	107 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	BASP1	P80723	227 aa	Known RBP	0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	KLRD1	Q13241	179 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	TMEM14EP	Q6UXP3	125 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	LYG2	Q86SG7	212 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	IFT20	Q8IY31	132 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	AP3S1	Q92572	193 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	ZNF714	Q96N38	554 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	PBDC1	Q9BVG4	233 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	TMEM138	Q9NPI0	162 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	SS18L2	Q9UHA2	77 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	ASB4	Q9Y574	426 aa		0.63	□□□□□ -2.31
PTCD3-209	ENST00000472044	OR2T8	A6NH00	312 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	MFSD11	O43934	449 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	HIST1H2BK	O60814	126 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	HIST1H2BJ	P06899	126 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	TMBIM6	P55061	237 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	VBP1	P61758	197 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	GNG3	P63215	75 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	PHF5A	Q7RTV0	110 aa	Known RBP	0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	OR4K15	Q8NH41	348 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	PSMF1	Q92530	271 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	PLEKHB2	Q96CS7	222 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	MAP1LC3B	Q9GZQ8	125 aa		0.62	□□□□□ -2.31
PTCD3-209	ENST00000472044	ANKRD31	Q8N7Z5	1873 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	hDV103S1	A0JD37	113 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	IGLV3-1	P01715	115 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	CSN2	P05814	226 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	SNCB	Q16143	134 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	C1orf140	Q5VVS0	124 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	HSPB8	Q9UJY1	196 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	ERBIN	Q96RT1	1412 aa		0.61	□□□□□ -2.31
PTCD3-209	ENST00000472044	ZCCHC11	Q5TAX3	1644 aa	Known RBP	0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044		K7ERJ3	54 aa		0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044	RER1	O15258	196 aa		0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044	LRRC18	Q8N456	261 aa		0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044	SMIM20	Q8N5G0	67 aa		0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044	PRRT1	Q99946	306 aa		0.6	□□□□□ -2.31
PTCD3-209	ENST00000472044	SYNM	O15061	1565 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	YTHDC2	Q9H6S0	1430 aa	Known RBP	0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	ODAM	A1E959	279 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	JMJD7-PLA2G4B	H0Y9G9	81 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	PPP1R2	P41236	205 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	MSMO1	Q15800	293 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	CDC26	Q8NHZ8	85 aa		0.59	□□□□□ -2.31
PTCD3-209	ENST00000472044	AHNAK2	Q8IVF2	5795 aa		0.59	□□□□□ -2.32
PTCD3-209	ENST00000472044	ZNF462	Q96JM2	2506 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	LYRM1	O43325	122 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	PIAS1	O75925	651 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	PPY	P01298	95 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	IDO1	P14902	403 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	RPL35	P42766	123 aa	Known RBP	0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	TCTA	P57738	103 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	TAS2R41	P59536	307 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	HBB	P68871	147 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	EIF3I	Q13347	325 aa	Known RBP	0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	SPATA45	Q537H7	98 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	GLIPR1L1	Q6UWM5	242 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	OR2H1	Q9GZK4	316 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	UFC1	Q9Y3C8	167 aa		0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	NUP210	Q8TEM1	1887 aa	Predicted RBP	0.58	□□□□□ -2.32
PTCD3-209	ENST00000472044	ROCK1	Q13464	1354 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	RTL9	Q8NET4	1388 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	MUC4	Q99102	2169 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	C9orf170	A2RU37	121 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	TMEM238	C9JI98	176 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	GPR31	O00270	319 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	RTL8B	Q17RB0	113 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	FKBP1C	Q5VVH2	108 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	OR10AC1	Q8NH08	325 aa		0.57	□□□□□ -2.32
PTCD3-209	ENST00000472044	WFDC10A	Q9H1F0	79 aa		0.57	□□□□□ -2.32

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