RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HSBP1O75506 76 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 EBI3Q14213 229 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 CYB5R2Q6BCY4 276 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 RNASEKQ6P5S7 137 aaKnown RBP7□□□□□ -1.29
SYNE1-217ENST00000466159 GFRA4Q9GZZ7 299 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 PSG8Q9UQ74 426 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 RNF24Q9Y225 148 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 OOSP1A8MZH6 123 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 M0QZ24 198 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 G0S2P27469 103 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 UQCRFS1P47985 274 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 LYPD1Q8N2G4 141 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 Q8N9W7 124 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 TMEM75Q8N9X5 138 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 URB1-AS1Q96HZ7 61 aa7□□□□□ -1.29
SYNE1-217ENST00000466159 IGHV3OR16-8A0A075B7F1 116 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 IGHV3-35A0A0C4DH35 117 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 C19orf84I3L1E1 186 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 OVOL3O00110 214 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 CRIP1P50238 77 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 PSG3Q16557 428 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 BORCS7Q96B45 105 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 AJUBAQ96IF1 538 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF48Q96MX3 618 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-217ENST00000466159 MIEN1Q9BRT3 115 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 BPESC1Q9GZL8 116 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 CELSR1Q9NYQ6 3014 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 COL12A1Q99715 3063 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 IGHV2-70DA0A0C4DH43 119 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 TRBV6-1A0A0K0K1D8 114 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 K7EQM0 130 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 M0R2Z0 102 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 APOHP02749 345 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-217ENST00000466159 CTSGP08311 255 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 RAB4AP20338 218 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 EFNA4P52798 201 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 LCN12Q6JVE5 192 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 C16orf54Q6UWD8 224 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 C8orf49Q96NF6 230 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 THYN1Q9P016 225 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 ZFP30Q9Y2G7 519 aa6.99□□□□□ -1.29
SYNE1-217ENST00000466159 SOX21Q9Y651 276 aaPredicted RBP6.99□□□□□ -1.29
SYNE1-217ENST00000466159 FAM231BA6NCW3 169 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 SH2D7A6NKC9 451 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-217ENST00000466159 M0R143 59 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 FAM106CPP0CH98 169 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 PMCHL1Q16048 86 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 ATOH7Q8N100 152 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 OR4B1Q8NGF8 309 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 ITLN2Q8WWU7 325 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-217ENST00000466159 SPTAN1Q13813 2472 aaKnown RBP6.98□□□□□ -1.29
SYNE1-217ENST00000466159 FAM181BA6NEQ2 426 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 CHEK1O14757 476 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 SAA4P35542 130 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 UBE2E1P51965 193 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 LMO4P61968 165 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 EBLN2Q6P2I7 272 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 TMUB1Q9BVT8 246 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 AAMDCQ9H7C9 122 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 LPAR2Q9HBW0 351 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 C1RLQ9NZP8 487 aa6.98□□□□□ -1.29
SYNE1-217ENST00000466159 HAX1O00165 279 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 ARMS2P0C7Q2 107 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 CTRLP40313 264 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 PDE6HQ13956 83 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 ECSCRQ19T08 205 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 SPATA45Q537H7 98 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 IGFL4Q6B9Z1 124 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 LOC102724200A0A096LPH7 203 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-217ENST00000466159 LINC01548A6NM66 108 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF25P17030 456 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-217ENST00000466159 GNLYP22749 145 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 MAJINQ3KP22 176 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 UNQ5815/PRO19632Q6UWF5 114 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 S100A7AQ86SG5 101 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 PRORYQ9H606 182 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 CLEC5AQ9NY25 188 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 IGKV2-40A0A087WW87 121 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-217ENST00000466159 C2orf70A6NJV1 201 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 ATP6V0E1O15342 81 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 IGKV2D-40P01614 121 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-217ENST00000466159 ZNF138P52744 262 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 C15orf32Q32M92 178 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 PIP4P2Q8N4L2 257 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 TPPP3Q9BW30 176 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 SMAD5-AS1Q9Y6J3 95 aa6.97□□□□□ -1.29
SYNE1-217ENST00000466159 A0A1B0GUT8 65 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 RPL7P18124 248 aaKnown RBP6.96□□□□□ -1.3
SYNE1-217ENST00000466159 HLA-DMBP28068 263 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 GPR183P32249 361 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 CSN1S1P47710 185 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 NDFIP1Q9BT67 221 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 RABAC1Q9UI14 185 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 TMSB15BA0A087X1C1 80 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.96□□□□□ -1.3
SYNE1-217ENST00000466159 G3V318 75 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 DLEU1O43261 78 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 PSG9Q00887 426 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 SPATA12Q7Z6I5 190 aa6.96□□□□□ -1.3
SYNE1-217ENST00000466159 CBY1Q9Y3M2 126 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms