RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SRSF6Q13247 344 aaKnown RBP9.28□□□□□ -0.92
CPSF3-202ENST00000460593 ZNF833PQ6ZTB9 187 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 GTSCR1Q86UQ5 136 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 FAM222BQ8WU58 562 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 SIGMAR1Q99720 223 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 GVINP1Q7Z2Y8 2422 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 WNK2Q9Y3S1 2297 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 NDUFS7O75251 213 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 SUB1P53999 127 aaKnown RBP eCLIP9.28□□□□□ -0.924e-10■■■□□ 14.7
CPSF3-202ENST00000460593 TNFAIP6P98066 277 aaPredicted RBP9.28□□□□□ -0.92
CPSF3-202ENST00000460593 ETDBQ3ZM63 59 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 STXBP6Q8NFX7 210 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 OR5A1Q8NGJ0 315 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 TMEM167AQ8TBQ9 72 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 SPRY4Q9C004 299 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 RNF7Q9UBF6 113 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 TNRC18O15417 2968 aaPredicted RBP9.27□□□□□ -0.92
CPSF3-202ENST00000460593 H3BMG7 143 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 IGLV1-44P01699 117 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 PPIFP30405 207 aaKnown RBP9.27□□□□□ -0.93
CPSF3-202ENST00000460593 LGALS9BQ3B8N2 356 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 LGALS9CQ6DKI2 356 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 C22orf34Q6ZV56 151 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM133Q9H2Q1 129 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 HIGD1AQ9Y241 93 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 MRPL51Q4U2R6 128 aaKnown RBP9.27□□□□□ -0.93
CPSF3-202ENST00000460593 OR9G4Q8NGQ1 327 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 SLC25A39Q9BZJ4 359 aaPredicted RBP9.27□□□□□ -0.93
CPSF3-202ENST00000460593 MSRB1Q9NZV6 116 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 PSG8Q9UQ74 426 aa9.27□□□□□ -0.93
CPSF3-202ENST00000460593 CNOT1A5YKK6 2376 aaKnown RBP9.27□□□□□ -0.93
CPSF3-202ENST00000460593 GAGE12HA6NDE8 117 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 EVI2AP22794 236 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 MRGPRG-AS1Q2M3A8 158 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 CCDC144NLQ6NUI1 221 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 OR4X2Q8NGF9 303 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 OR4C13Q8NGP0 309 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 CACNA1BQ00975 2339 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 HBDP02042 147 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 IGFL4Q6B9Z1 124 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 C8orf46Q8TAG6 207 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 OTORQ9NRC9 128 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 GATA1P15976 413 aaPredicted RBP9.26□□□□□ -0.93
CPSF3-202ENST00000460593 CEACAM3P40198 252 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 ATP5IP56385 69 aaPredicted RBP9.26□□□□□ -0.93
CPSF3-202ENST00000460593 MZT1Q08AG7 82 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM75Q8N9X5 138 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 CHAC1Q9BUX1 264 aa9.26□□□□□ -0.93
CPSF3-202ENST00000460593 WI2-2373I1.2A0A1W2PRP0 233 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 IGHV1-46P01743 117 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 CKS2P33552 79 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 ZNF71Q9NQZ8 489 aaPredicted RBP9.25□□□□□ -0.93
CPSF3-202ENST00000460593 CCL11P51671 97 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM200BQ69YZ2 307 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 ORMDL3Q8N138 153 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 VGLL1Q99990 258 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 SLC25A15Q9Y619 301 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 MALRD1Q5VYJ5 2156 aa9.25□□□□□ -0.93
CPSF3-202ENST00000460593 FCER1GP30273 86 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 RAB9AP51151 201 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 FAM104BQ5XKR9 115 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 SFTA2Q6UW10 78 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 Q8TAT8 98 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 TRGV9Q99603 122 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 SPAG8Q99932 426 aaPredicted RBP9.24□□□□□ -0.93
CPSF3-202ENST00000460593 TWIST1Q15672 202 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 SPANXB1Q9NS25 103 aaPredicted RBP9.24□□□□□ -0.93
CPSF3-202ENST00000460593 PRSS1P07477 247 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 LYPD2Q6UXB3 125 aa9.24□□□□□ -0.93
CPSF3-202ENST00000460593 RELNP78509 3460 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 CRYGCP07315 174 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 PHLDA1Q8WV24 401 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-202ENST00000460593 COL25A1Q9BXS0 654 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-202ENST00000460593 RAB9BQ9NP90 201 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 TECTAO75443 2155 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 TRBV25-1A0A075B6N4 114 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 IGKV2-40A0A087WW87 121 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-202ENST00000460593 IGKV2D-40P01614 121 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-202ENST00000460593 SMIM17P0DL12 118 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 CD300EQ496F6 205 aaPredicted RBP9.23□□□□□ -0.93
CPSF3-202ENST00000460593 ZGRF1Q86YA3 2104 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 MAPKAPK5-AS1Q8N8E1 139 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 ATP6V0BQ99437 205 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 PROCRQ9UNN8 238 aa9.23□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM189A5PLL7 270 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 FTH1P19P0C7X4 201 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 LEPP41159 167 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 RPL27AP46776 148 aaKnown RBP9.22□□□□□ -0.93
CPSF3-202ENST00000460593 PAX8Q06710 450 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 ZNF562Q6V9R5 426 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 FOXC2Q99958 501 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 IGHV3OR16-8A0A075B7F1 116 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 TRAV26-1A0A087WT03 109 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 PRRG2O14669 202 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 SH2D1AO60880 128 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 VMA21Q3ZAQ7 101 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 KLF17Q5JT82 389 aaPredicted RBP9.22□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM178AQ8NBL3 297 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 TMEM160Q9NX00 188 aa9.22□□□□□ -0.93
CPSF3-202ENST00000460593 TRBV19A0A075B6N1 114 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms