RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PSG8Q9UQ74 426 aa11.78□□□□□ -0.52
LDLR-202ENST00000455727 S100A7P31151 101 aa11.78□□□□□ -0.52
LDLR-202ENST00000455727 BCL6BQ8N143 479 aaPredicted RBP11.78□□□□□ -0.52
LDLR-202ENST00000455727 AAMDCQ9H7C9 122 aa11.78□□□□□ -0.52
LDLR-202ENST00000455727 ZNF785A8K8V0 405 aa11.77□□□□□ -0.52
LDLR-202ENST00000455727 RPL7P18124 248 aaKnown RBP11.77□□□□□ -0.52
LDLR-202ENST00000455727 PSG9Q00887 426 aa11.77□□□□□ -0.52
LDLR-202ENST00000455727 TOMM20LQ6UXN7 152 aa11.77□□□□□ -0.52
LDLR-202ENST00000455727 OR2T8A6NH00 312 aa11.77□□□□□ -0.53
LDLR-202ENST00000455727 NPFFO15130 113 aa11.77□□□□□ -0.53
LDLR-202ENST00000455727 OR2D3Q8NGH3 330 aa11.77□□□□□ -0.53
LDLR-202ENST00000455727 ZC2HC1AQ96GY0 325 aa11.77□□□□□ -0.53
LDLR-202ENST00000455727 PGLYRP4Q96LB8 373 aa11.77□□□□□ -0.53
LDLR-202ENST00000455727 SSBP4Q9BWG4 385 aaPredicted RBP11.76□□□□□ -0.53
LDLR-202ENST00000455727 MED13LQ71F56 2210 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 CENPVL3A0A0U1RRI6 287 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 HAX1O00165 279 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 GOSR1O95249 250 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 TMUB1Q9BVT8 246 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 RABAC1Q9UI14 185 aa11.76□□□□□ -0.53
LDLR-202ENST00000455727 PMCHP20382 165 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 FAM162BQ5T6X4 162 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 UNQ5815/PRO19632Q6UWF5 114 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 NIT1Q86X76 327 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 ZNF502Q8TBZ5 544 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 C20orf144Q9BQM9 153 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 FBLL1A6NHQ2 334 aaKnown RBP11.75□□□□□ -0.53
LDLR-202ENST00000455727 M0R3E3 92 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 IGHV3-23P01764 117 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 IGHV4-39P01824 125 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 APOHP02749 345 aaPredicted RBP11.75□□□□□ -0.53
LDLR-202ENST00000455727 CSN1S1P47710 185 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 PIP4P2Q8N4L2 257 aa11.75□□□□□ -0.53
LDLR-202ENST00000455727 ATP6V0E1O15342 81 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 PAX8Q06710 450 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 COX8CQ7Z4L0 72 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 Q8N976 141 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 RNF114Q9Y508 228 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 EREGO14944 169 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 KRTDAPP60985 99 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 C15orf32Q32M92 178 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 NDFIP1Q9BT67 221 aa11.74□□□□□ -0.53
LDLR-202ENST00000455727 HSBP1O75506 76 aa11.73□□□□□ -0.53
LDLR-202ENST00000455727 CRIP1P50238 77 aa11.73□□□□□ -0.53
LDLR-202ENST00000455727 RAB9AP51151 201 aa11.73□□□□□ -0.53
LDLR-202ENST00000455727 Q71RC1 249 aaPredicted RBP11.73□□□□□ -0.53
LDLR-202ENST00000455727 SH2D7A6NKC9 451 aaPredicted RBP11.72□□□□□ -0.53
LDLR-202ENST00000455727 RHOGP84095 191 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 Q6AWC8 147 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 FAM19A2Q8N3H0 131 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 GATD1Q8NB37 220 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 BORCS7Q96B45 105 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 VAMP8Q9BV40 100 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 SNHG12Q9BXW3 62 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 ASH1LQ9NR48 2969 aaKnown RBP11.72□□□□□ -0.53
LDLR-202ENST00000455727 A0A1B0GUT8 65 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 A0A1B0GW15 77 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 NUTF2P61970 127 aaKnown RBP11.72□□□□□ -0.53
LDLR-202ENST00000455727 ECSCRQ19T08 205 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 TDRG1Q3Y452 100 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 SMAD5-AS1Q9Y6J3 95 aa11.72□□□□□ -0.53
LDLR-202ENST00000455727 LOC102724200A0A096LPH7 203 aaPredicted RBP11.71□□□□□ -0.53
LDLR-202ENST00000455727 CHEK1O14757 476 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 C3orf79P0CE67 100 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 CT45A10P0DMU9 189 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 SAPCD1Q5SSQ6 148 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 DMRTA1Q5VZB9 504 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 C5orf56Q8N8D9 126 aa11.71□□□□□ -0.53
LDLR-202ENST00000455727 M0R143 59 aa11.71□□□□□ -0.54
LDLR-202ENST00000455727 NTF3P20783 257 aa11.71□□□□□ -0.54
LDLR-202ENST00000455727 GPR183P32249 361 aa11.71□□□□□ -0.54
LDLR-202ENST00000455727 RIGQ13278 110 aa11.71□□□□□ -0.54
LDLR-202ENST00000455727 ZFAND3Q9H8U3 227 aa11.71□□□□□ -0.54
LDLR-202ENST00000455727 CLEC3BP05452 202 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 CHCHD1Q96BP2 118 aaKnown RBP11.7□□□□□ -0.54
LDLR-202ENST00000455727 PIMREGQ9BSJ6 248 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 TRBV7-1A0A0A6YYK4 115 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 TMEM8BA6NDV4 472 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 NDUFS8O00217 210 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 TCAPO15273 167 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 CYB5R2Q6BCY4 276 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 ATP6V0BQ99437 205 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 MIEN1Q9BRT3 115 aa11.7□□□□□ -0.54
LDLR-202ENST00000455727 AKAP6Q13023 2319 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 A0A087X0K7 114 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.69□□□□□ -0.54
LDLR-202ENST00000455727 IGHV1-69DA0A0B4J2H0 117 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 IGHV1-69P01742 117 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 RNASEKQ6P5S7 137 aaKnown RBP11.69□□□□□ -0.54
LDLR-202ENST00000455727 URB1-AS1Q96HZ7 61 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 C8orf49Q96NF6 230 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 LINC01548A6NM66 108 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 M0R2Z0 102 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 BUB3O43684 328 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 RAB4AP20338 218 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 CRIP2P52943 208 aaPredicted RBP11.69□□□□□ -0.54
LDLR-202ENST00000455727 MRPL52Q86TS9 123 aaKnown RBP11.69□□□□□ -0.54
LDLR-202ENST00000455727 EEF1AKMT3Q96AZ1 226 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 MOB4Q9Y3A3 225 aa11.69□□□□□ -0.54
LDLR-202ENST00000455727 PAM16Q9Y3D7 125 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms