RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 FOXA3P55318 350 aaPredicted RBP6.93□□□□□ -1.3
PTPN3-204ENST00000446349 DAZAP2Q15038 168 aaPredicted RBP6.93□□□□□ -1.3
PTPN3-204ENST00000446349 PCP4P48539 62 aa6.93□□□□□ -1.3
PTPN3-204ENST00000446349 TMEM14BQ9NUH8 114 aa6.93□□□□□ -1.3
PTPN3-204ENST00000446349 NDUFA3O95167 84 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 FOXG1P55316 489 aaPredicted RBP6.92□□□□□ -1.3
PTPN3-204ENST00000446349 TMEM170AQ8WVE7 144 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 MGST2Q99735 147 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 PYYP10082 97 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 RNASE2P10153 161 aaKnown RBP6.92□□□□□ -1.3
PTPN3-204ENST00000446349 SYNJ2BPP57105 145 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 LINC00158P58513 81 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 ZNF876PQ49A33 203 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 TCF15Q12870 199 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 SFTA2Q6UW10 78 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 SCRT1Q9BWW7 348 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 TRBV25-1A0A075B6N4 114 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 IGHV3OR16-8A0A075B7F1 116 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 SHISA3A0PJX4 238 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 RNF222A6NCQ9 220 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 RPL15P61313 204 aaKnown RBP6.92□□□□□ -1.3
PTPN3-204ENST00000446349 LYPD2Q6UXB3 125 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 TRAV12-3A0A0B4J271 114 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 MYMXA0A1B0GTQ4 84 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 SLC17A3O00476 420 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 C6orf226Q5I0X4 101 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 TNFRSF6BO95407 300 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 IFI27L1Q96BM0 104 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 IGHV2-5P01817 119 aa6.92□□□□□ -1.3
PTPN3-204ENST00000446349 GNG5P63218 68 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 CT83Q5H943 113 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 NOTCH3Q9UM47 2321 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 C5orf30Q96GV9 206 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 DMRT1Q9Y5R6 373 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 TSPAN13O95857 204 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 FOXE3Q13461 319 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 C10orf126Q8N4M7 172 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 RPRMLQ8N4K4 120 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 RNASE7Q9H1E1 156 aaKnown RBP6.91□□□□□ -1.3
PTPN3-204ENST00000446349 PGPEP1LA6NFU8 196 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 DEFB131AP59861 70 aa6.91□□□□□ -1.3
PTPN3-204ENST00000446349 LEPROTO15243 131 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 ZNF561-AS1K7EIQ3 104 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 ATP6V0E1O15342 81 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 SELLP14151 372 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 PLA2G5P39877 138 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 IGKV2-40A0A087WW87 121 aaPredicted RBP6.9□□□□□ -1.3
PTPN3-204ENST00000446349 IGKV2D-40P01614 121 aaPredicted RBP6.9□□□□□ -1.3
PTPN3-204ENST00000446349 ATXN8Q156A1 80 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 TCTEX1D4Q5JR98 221 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 TMEM14CQ9P0S9 112 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 LINC00527Q9UJ94 153 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 TMEM89A2RUT3 159 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 M0R2P5 195 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 NDUFS6O75380 124 aaKnown RBP6.9□□□□□ -1.3
PTPN3-204ENST00000446349 QRFPP83859 136 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 PAX2Q02962 417 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 LY6G5BQ8NDX9 201 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 SPANXA1Q9NS26 97 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 MALRD1Q5VYJ5 2156 aa6.9□□□□□ -1.3
PTPN3-204ENST00000446349 OVOL3O00110 214 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 SRSF6Q13247 344 aaKnown RBP6.9□□□□□ -1.31
PTPN3-204ENST00000446349 C11orf68Q9H3H3 251 aaKnown RBP6.9□□□□□ -1.31
PTPN3-204ENST00000446349 NDUFA4L2Q9NRX3 87 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 LENEPQ9Y5L5 61 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 TMEM141Q96I45 108 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 A8MXK9 166 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 CDKN1BP46527 198 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 MRPL53Q96EL3 112 aaKnown RBP6.9□□□□□ -1.31
PTPN3-204ENST00000446349 LIME1Q9H400 295 aa6.9□□□□□ -1.31
PTPN3-204ENST00000446349 DDTP30046 118 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 PRR30Q53SZ7 412 aaPredicted RBP6.89□□□□□ -1.31
PTPN3-204ENST00000446349 OCC1Q8TAD7 63 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 CHAC1Q9BUX1 264 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 SH2D1AO60880 128 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 DMRTA1Q5VZB9 504 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 F5H768 121 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 CA1P00915 261 aaPredicted RBP6.89□□□□□ -1.31
PTPN3-204ENST00000446349 ZNF329Q86UD4 541 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 ZNF492Q9P255 531 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 KLF12Q9Y4X4 402 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 A0A1W2PPI3 338 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 IGKV1-5P01602 117 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 OBSL1O75147 1896 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 A0A087WV48 116 aa6.89□□□□□ -1.31
PTPN3-204ENST00000446349 LGALS1P09382 135 aaKnown RBP6.89□□□□□ -1.31
PTPN3-204ENST00000446349 KIAA1549LQ6ZVL6 1849 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 TRBV24-1A0A075B6N3 115 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 PFN1P07737 140 aaKnown RBP6.88□□□□□ -1.31
PTPN3-204ENST00000446349 NEGR1Q7Z3B1 354 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 DLX4Q92988 240 aaPredicted RBP6.88□□□□□ -1.31
PTPN3-204ENST00000446349 MDKP21741 143 aaPredicted RBP6.88□□□□□ -1.31
PTPN3-204ENST00000446349 SHANK1Q9Y566 2161 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 C5orf63A6NC05 138 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 FBXL19-AS1Q494R0 122 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 NHP2Q9NX24 153 aaKnown RBP6.88□□□□□ -1.31
PTPN3-204ENST00000446349 LINC00473A8K010 186 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 K7EMI3 77 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 LYL1P12980 280 aa6.88□□□□□ -1.31
PTPN3-204ENST00000446349 C10orf55Q5SWW7 151 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms