RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MGAQ8IWI9 3026 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 SMKR1H3BMG3 65 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 K7ERU9 68 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 CCL25O15444 150 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 MFAP4P55083 255 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 LDLRAD2Q5SZI1 272 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 THYN1Q9P016 225 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 CUL9Q8IWT3 2517 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 OR2T8A6NH00 312 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 NPIPB5A8MRT5 1133 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 GAGE1Q13065 139 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 PRSS33Q8NF86 280 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 ST20Q9HBF5 79 aa9.48□□□□□ -0.89
MSH6-204ENST00000445503 IGKV3-7A0A075B6H7 116 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 GAGE10A6NGK3 116 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 D6R8Y8 96 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 GPR183P32249 361 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 RUSC1-AS1Q66K80 236 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 THAP8Q8NA92 274 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 FBLL1A6NHQ2 334 aaKnown RBP9.47□□□□□ -0.89
MSH6-204ENST00000445503 BUB1B-PAK6H3BSN5 160 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 ZNF207O43670 478 aaKnown RBP9.47□□□□□ -0.89
MSH6-204ENST00000445503 CEACAM8P31997 349 aaPredicted RBP9.47□□□□□ -0.89
MSH6-204ENST00000445503 CACNG7P62955 275 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 ORAOV1Q8WV07 137 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 BOD1L1Q8NFC6 3051 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 TMEM213A2RRL7 107 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 RPL24P83731 157 aaKnown RBP9.47□□□□□ -0.89
MSH6-204ENST00000445503 LYZL1Q6UWQ5 148 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 AMN1Q8IY45 258 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 DPM3Q9P2X0 92 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 MUC6Q6W4X9 2439 aa9.47□□□□□ -0.89
MSH6-204ENST00000445503 TNRC6BQ9UPQ9 1833 aaKnown RBP9.47□□□□□ -0.89
MSH6-204ENST00000445503 B9A039 149 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 IFI27P40305 119 aaPredicted RBP9.46□□□□□ -0.89
MSH6-204ENST00000445503 PIMREGQ9BSJ6 248 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 A0A1B0GV72 72 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 CCL21O00585 134 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 ZC2HC1AQ96GY0 325 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 C8orf49Q96NF6 230 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 RAB1BQ9H0U4 201 aa9.46□□□□□ -0.89
MSH6-204ENST00000445503 IGLV2-23P01705 113 aa9.46□□□□□ -0.9
MSH6-204ENST00000445503 PET117Q6UWS5 81 aa9.46□□□□□ -0.9
MSH6-204ENST00000445503 IGLC1P0CG04 106 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 Q8N976 141 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 WIPF2Q8TF74 440 aaPredicted RBP9.45□□□□□ -0.9
MSH6-204ENST00000445503 UBTD1Q9HAC8 227 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 C21orf62Q9NYP8 219 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 VWC2LB2RUY7 222 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 NBR2O15453 112 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 CTRLP40313 264 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 ZNF414Q96IQ9 312 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 ANKRD11Q6UB99 2663 aaPredicted RBP9.45□□□□□ -0.9
MSH6-204ENST00000445503 PF4V1P10720 104 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 GCSHP23434 173 aa9.45□□□□□ -0.9
MSH6-204ENST00000445503 NDUFB8O95169 186 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 GP9P14770 177 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 EVI2AP22794 236 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 KLF5Q13887 457 aaPredicted RBP9.44□□□□□ -0.9
MSH6-204ENST00000445503 ORMDL3Q8N138 153 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 MBD6Q96DN6 1003 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 IGF2RP11717 2491 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 C2orf70A6NJV1 201 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 LTAP01374 205 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 THBDP07204 575 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 RNASE8Q8TDE3 154 aaKnown RBP9.44□□□□□ -0.9
MSH6-204ENST00000445503 NOTCH3Q9UM47 2321 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 C7orf71A4D174 169 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 RPL7P18124 248 aaKnown RBP9.44□□□□□ -0.9
MSH6-204ENST00000445503 PIP4P1Q86T03 277 aa9.44□□□□□ -0.9
MSH6-204ENST00000445503 LOC105371242A0A075B767 164 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 A6NDN8 102 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 H3BUT2 72 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 ZNF672Q499Z4 452 aaPredicted RBP9.43□□□□□ -0.9
MSH6-204ENST00000445503 FER1L6-AS1Q8NA97 138 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 ZNF492Q9P255 531 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 PTPRQQ9UMZ3 2332 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 TRBV19A0A075B6N1 114 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 PSMB11A5LHX3 300 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 PSG3Q16557 428 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 RABAC1Q9UI14 185 aa9.43□□□□□ -0.9
MSH6-204ENST00000445503 LINC00311Q8N616 119 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 ARPC1AQ92747 370 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 SHANK2-AS3Q9BTD1 123 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 KLK15Q9H2R5 256 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 LOC400499M0QZD8 3231 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 A1L4Q6 167 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 S100A4P26447 101 aaKnown RBP9.42□□□□□ -0.9
MSH6-204ENST00000445503 Q71RC1 249 aaPredicted RBP9.42□□□□□ -0.9
MSH6-204ENST00000445503 SPATA12Q7Z6I5 190 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 SH2D1AO60880 128 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 PEF1Q9UBV8 284 aaKnown RBP9.42□□□□□ -0.9
MSH6-204ENST00000445503 A0A1B0GW15 77 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 IGKV1-17P01599 117 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 HIST1H1AQ02539 215 aaPredicted RBP9.42□□□□□ -0.9
MSH6-204ENST00000445503 FAM120AOSQ5T036 256 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 PVRIGQ6DKI7 326 aa9.42□□□□□ -0.9
MSH6-204ENST00000445503 J3QR89 54 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 TMEM97Q5BJF2 176 aa9.41□□□□□ -0.9
MSH6-204ENST00000445503 FAM71F2Q6NXP2 309 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms