RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 EMP1P54849 157 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 ADORA2A-AS1P86434 159 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 SLC25A34Q6PIV7 304 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 PIP4P2Q8N4L2 257 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 ZNF414Q96IQ9 312 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 ALPK3Q96L96 1907 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 FAM181BA6NEQ2 426 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 IGHV2-70P01814 119 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 FOXL1Q12952 345 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 ERASQ7Z444 233 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 PMCHL2Q9BQD1 86 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 NRN1Q9NPD7 142 aa9.86□□□□□ -0.83
TCOF1-205ENST00000439160 IGKV3OR2-268A0A0C4DH90 116 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 A0A1B0GW15 77 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 PSMB2P49721 201 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 SAMD13Q5VXD3 122 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 TMEM160Q9NX00 188 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 USP9YO00507 2555 aaPredicted RBP9.85□□□□□ -0.83
TCOF1-205ENST00000439160 ARHGAP21Q5T5U3 1957 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 J3QR89 54 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 NSUN5P1Q3KNT7 163 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 LCN12Q6JVE5 192 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 SRSF8Q9BRL6 282 aaKnown RBP9.85□□□□□ -0.83
TCOF1-205ENST00000439160 GNB1LQ9BYB4 327 aa9.85□□□□□ -0.83
TCOF1-205ENST00000439160 ZNF256Q9Y2P7 627 aaPredicted RBP9.85□□□□□ -0.83
TCOF1-205ENST00000439160 PRRC2CQ9Y520 2896 aaKnown RBP9.85□□□□□ -0.83
TCOF1-205ENST00000439160 A6NDN8 102 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 H3BVH4 76 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 UBE2L6O14933 153 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 PAX1P15863 534 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 SHANK2-AS3Q9BTD1 123 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 USP9XQ93008 2570 aaPredicted RBP9.84□□□□□ -0.83
TCOF1-205ENST00000439160 RHPN1-AS1Q9BWJ2 59 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 SNAI2O43623 268 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 USMG5Q96IX5 58 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 TNFRSF18Q9Y5U5 241 aa9.84□□□□□ -0.83
TCOF1-205ENST00000439160 OVOL1O14753 267 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 POU2AF1Q16633 256 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 FCN3O75636 299 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 GCSHP23434 173 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 Q96MF0 132 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 SETD2Q9BYW2 2564 aaPredicted RBP9.83□□□□□ -0.84
TCOF1-205ENST00000439160 C10orf91Q5T1B1 145 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 STHQ8IWL8 128 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 JMJD8Q96S16 334 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 TRAV8-6A0A0B4J262 113 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 PRSS2P07478 247 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 EVI2AP22794 236 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 ZNF124Q15973 351 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 DMRTC2Q8IXT2 367 aaPredicted RBP9.83□□□□□ -0.84
TCOF1-205ENST00000439160 ZNF664Q8N3J9 261 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 FAM110DQ8TAY7 271 aaPredicted RBP9.83□□□□□ -0.84
TCOF1-205ENST00000439160 RAB37Q96AX2 223 aa9.83□□□□□ -0.84
TCOF1-205ENST00000439160 RANBP2P49792 3224 aaKnown RBP9.82□□□□□ -0.84
TCOF1-205ENST00000439160 ZNF138P52744 262 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 C22orf34Q6ZV56 151 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 FNDC4Q9H6D8 234 aaPredicted RBP9.82□□□□□ -0.84
TCOF1-205ENST00000439160 PLXNB1O43157 2135 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 DUSP14O95147 198 aaKnown RBP9.82□□□□□ -0.84
TCOF1-205ENST00000439160 SYNJ2BPP57105 145 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 C19orf54Q5BKX5 351 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 LCNL1Q6ZST4 164 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 C9orf139Q6ZV77 190 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 C2CD3Q4AC94 2353 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 IGHV2-5P01817 119 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 LINC00614P0C842 121 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 GATA3P23771 443 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 PSG3Q16557 428 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 NUP35Q8NFH5 326 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 SCGB3A1Q96QR1 104 aa9.82□□□□□ -0.84
TCOF1-205ENST00000439160 A0A1B0GUS0 222 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 H7C1H1 209 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 FAM120AOSQ5T036 256 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 LYZL1Q6UWQ5 148 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 FOXC2Q99958 501 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 MIEN1Q9BRT3 115 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 ZFYVE26Q68DK2 2539 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 GGTLC3B5MD39 225 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 NCR2O95944 276 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 KLHL30-AS1Q8NEE0 82 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 PRDM13Q9H4Q3 707 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 PEF1Q9UBV8 284 aaKnown RBP9.81□□□□□ -0.84
TCOF1-205ENST00000439160 TRGV2A0A075B6R0 118 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 FAM223BA6NKX1 122 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 TMEM170BQ5T4T1 132 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 FAM223AQ8IWN6 122 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 PPP1R17O96001 155 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 CR1LQ2VPA4 569 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 LY96Q9Y6Y9 160 aa9.81□□□□□ -0.84
TCOF1-205ENST00000439160 SMAGPQ0VAQ4 97 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 C12orf54Q6X4T0 127 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 LYPD1Q8N2G4 141 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 RNF182Q8N6D2 247 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 LEPP41159 167 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 YPEL3P61236 119 aaPredicted RBP9.8□□□□□ -0.84
TCOF1-205ENST00000439160 ERCC8Q13216 396 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 NIT1Q86X76 327 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 NRGNQ92686 78 aa9.8□□□□□ -0.84
TCOF1-205ENST00000439160 DAZ1Q9NQZ3 744 aaKnown RBP9.8□□□□□ -0.84
TCOF1-205ENST00000439160 IGHV4-61A0A0C4DH41 118 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms