RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DIRC3C9JPN6 131 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 IGLC2P0DOY2 106 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 EBLN2Q6P2I7 272 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 DYNLRB2Q8TF09 96 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 LINC00527Q9UJ94 153 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 LENEPQ9Y5L5 61 aa6.53□□□□□ -1.36
USP54-203ENST00000418501 VCANP13611 3396 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 A0A096LNT2 108 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 FSHBP01225 129 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 IGLV1-40P01703 118 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 KRTAP10-9P60411 292 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 PYY3Q5JQD4 70 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 DERL1Q9BUN8 251 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 BUB3O43684 328 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 PFN1P07737 140 aaKnown RBP6.52□□□□□ -1.37
USP54-203ENST00000418501 BLCAPP62952 87 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 GNG5P63218 68 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 GNB1LQ9BYB4 327 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 IGHV7-4-1A0A0J9YVY3 117 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 DUSP14O95147 198 aaKnown RBP6.52□□□□□ -1.37
USP54-203ENST00000418501 LTAP01374 205 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 PPIFP30405 207 aaKnown RBP6.52□□□□□ -1.37
USP54-203ENST00000418501 DNLZQ5SXM8 178 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 C2orf88Q9BSF0 95 aa6.52□□□□□ -1.37
USP54-203ENST00000418501 DEFA6Q01524 100 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 TM4SF20Q53R12 229 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 C16orf54Q6UWD8 224 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 CCDC140Q96MF4 163 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 NOL4LQ96MY1 436 aaPredicted RBP6.51□□□□□ -1.37
USP54-203ENST00000418501 PYGO2Q9BRQ0 406 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 NRN1Q9NPD7 142 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 AURKAIP1Q9NWT8 199 aaPredicted RBP6.51□□□□□ -1.37
USP54-203ENST00000418501 TRAV34A0A0B4J273 112 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 FABP5P3A8MUU1 101 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 ADMP35318 185 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 MYCNOSP40205 109 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 LCN12Q6JVE5 192 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 RBPMS2Q6ZRY4 209 aaKnown RBP6.51□□□□□ -1.37
USP54-203ENST00000418501 REC114Q7Z4M0 266 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 TMEM18Q96B42 140 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 YPEL4Q96NS1 127 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 H3BTX0 84 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 BAGE3Q86Y29 109 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 EXOC3-AS1Q8N2X6 119 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 FAM208BQ5VWN6 2430 aa6.51□□□□□ -1.37
USP54-203ENST00000418501 IGHV3-35A0A0C4DH35 117 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 A0A1B0GUS0 222 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 AVPP01185 164 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 HIST1H1AQ02539 215 aaPredicted RBP6.5□□□□□ -1.37
USP54-203ENST00000418501 MORN5Q5VZ52 161 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 WFDC11Q8NEX6 87 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 IGF2BP2-AS1Q96M15 143 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 RHPN1-AS1Q9BWJ2 59 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 WNK2Q9Y3S1 2297 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 LINC01619G3V211 115 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 LGALS9O00182 355 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 APCSP02743 223 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 BCL6BQ8N143 479 aaPredicted RBP6.5□□□□□ -1.37
USP54-203ENST00000418501 NUDT10Q8NFP7 164 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 NUDT11Q96G61 164 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 SMPXQ9UHP9 88 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 VPS13AQ96RL7 3174 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 SPTAN1Q13813 2472 aaKnown RBP6.5□□□□□ -1.37
USP54-203ENST00000418501 SNURFLB1AK76 121 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 TRGC2P03986 189 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 LEPP41159 167 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 ZNF138P52744 262 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 HBBP68871 147 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 C19orf54Q5BKX5 351 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 ZFAND3Q9H8U3 227 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 TNCP24821 2201 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 RAB4AP20338 218 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 TCF24Q7RTU0 167 aa6.5□□□□□ -1.37
USP54-203ENST00000418501 CRISP2P16562 243 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 KLHDC1Q8N7A1 406 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 HOXA5P20719 270 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 TRBV7-9A0A0J9YWB2 115 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 ZNF207O43670 478 aaKnown RBP6.49□□□□□ -1.37
USP54-203ENST00000418501 ORM1P02763 201 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 PSMB8P28062 276 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 LBHQ53QV2 105 aaPredicted RBP6.49□□□□□ -1.37
USP54-203ENST00000418501 V9GYV3 84 aa6.49□□□□□ -1.37
USP54-203ENST00000418501 SMIM27A0A1W2PRY6 76 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 F2Z2F3 143 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 CDX1P47902 265 aaPredicted RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 C8orf86Q6ZUL3 223 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 SAMD10Q9BYL1 202 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 MRPL18Q9H0U6 180 aaKnown RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 RNASE7Q9H1E1 156 aaKnown RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 A0A1B0GUT8 65 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 LINC01548A6NM66 108 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 SLC17A3O00476 420 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 SNRPCP09234 159 aaKnown RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 SRSF2Q01130 221 aaKnown RBP6.48□□□□□ -1.37
USP54-203ENST00000418501 NHLRC2Q8NBF2 726 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 C4orf3Q8WVX3 66 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 U3KQE9 123 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 TRAV21A0A0B4J279 112 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 PGPEP1LA6NFU8 196 aa6.48□□□□□ -1.37
USP54-203ENST00000418501 OR4C46A6NHA9 309 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms