RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RCC1LQ96I51 464 aaKnown RBP5.95□□□□□ -1.46
SCN9A-202ENST00000409435 PRADC1Q9BSG0 188 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 SPTBN1Q01082 2364 aaKnown RBP5.95□□□□□ -1.46
SCN9A-202ENST00000409435 ANK1P16157 1881 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 TRBV24-1A0A075B6N3 115 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 TEX45Q8NA69 505 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 CUL9Q8IWT3 2517 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 MYCNOSP40205 109 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 RMI2Q96E14 147 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 RNF5Q99942 180 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 CSTL1Q9H114 145 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 TRBV7-1A0A0A6YYK4 115 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 DKK1O94907 266 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 SUMO4Q6EEV6 95 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 JPT2Q9H910 190 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 SELENOKQ9Y6D0 94 aa5.95□□□□□ -1.46
SCN9A-202ENST00000409435 HIGD1CA8MV81 97 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 FAM90A2PQ658T7 463 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 TMEM91Q6ZNR0 172 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 C15orf53Q8NAA6 179 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 GAFA1Q96PS6 74 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 C20orf144Q9BQM9 153 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 SRSF8Q9BRL6 282 aaKnown RBP5.94□□□□□ -1.46
SCN9A-202ENST00000409435 COLCA2A8K830 154 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 WISP3O95389 354 aaPredicted RBP5.94□□□□□ -1.46
SCN9A-202ENST00000409435 ZNF146Q15072 292 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 KLHDC2Q9Y2U9 406 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 ADAMTS9Q9P2N4 1935 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 WDR81Q562E7 1941 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 C9JCJ5 164 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 C12orf77C9JDV5 145 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 HOXD3P31249 432 aaPredicted RBP5.94□□□□□ -1.46
SCN9A-202ENST00000409435 GAS1P54826 345 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 SPSB3Q6PJ21 355 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 NDUFA11Q86Y39 141 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 ANAPC10Q9UM13 185 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 TREML4Q6UXN2 200 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 AMN1Q8IY45 258 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 PAQR4Q8N4S7 273 aaPredicted RBP5.94□□□□□ -1.46
SCN9A-202ENST00000409435 CACNG8Q8WXS5 425 aa5.94□□□□□ -1.46
SCN9A-202ENST00000409435 ETDBQ3ZM63 59 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 ACTL10Q5JWF8 245 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 GFI1BQ5VTD9 330 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 ZNF625Q96I27 306 aaPredicted RBP5.93□□□□□ -1.46
SCN9A-202ENST00000409435 BBC3Q96PG8 261 aaPredicted RBP5.93□□□□□ -1.46
SCN9A-202ENST00000409435 SNHG12Q9BXW3 62 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 SPRY4Q9C004 299 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 OSTCQ9NRP0 149 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 IGHV3OR16-8A0A075B7F1 116 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 SCO2A0A1W2PP80 73 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 HERV-K104P63124 156 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 ZNF818PQ6ZRF7 136 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 A0A0G2JK05 382 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 M0R381 172 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 FGFBP3Q8TAT2 258 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 WFDC6Q9BQY6 131 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 TCF19Q9Y242 345 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 EFNA2O43921 213 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 C5orf64Q2M2E5 130 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 MBD6Q96DN6 1003 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 UBE2E2Q96LR5 201 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 GREB1Q4ZG55 1949 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 A0A087WX48 190 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 TEX48A0A1B0GUV7 120 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 IGFBP2P18065 325 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 C15orf32Q32M92 178 aa5.93□□□□□ -1.46
SCN9A-202ENST00000409435 FOXI3A8MTJ6 420 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-202ENST00000409435 PRR32B1ATL7 298 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 FNDC10F2Z333 226 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 LINC00158P58513 81 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 BAALCQ8WXS3 180 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 YPEL1O60688 119 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 INSL3P51460 131 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 Q5BKY6 102 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 YPEL2Q96QA6 119 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 MRPS18AQ9NVS2 196 aaKnown RBP5.92□□□□□ -1.46
SCN9A-202ENST00000409435 SAA2-SAA4A0A096LPE2 208 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 hDV102S1A0JD36 115 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 INSP01308 110 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 SAA2P0DJI9 122 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-202ENST00000409435 IGHV4-38-2P0DP08 117 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 DEFB130BP0DP73 79 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 DEFB130AP0DP74 79 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 LYL1P12980 280 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 PRCDQ00LT1 54 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 LINC00305Q7Z4B0 112 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 ARHGEF17Q96PE2 2063 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-202ENST00000409435 TRAV13-1A0A0B4J241 112 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 ATOX1O00244 68 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 CD55P08174 381 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 PAX1P15863 534 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 Q8TCH9 128 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 NOTCH2Q04721 2471 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 A0A1W2PPI3 338 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 LEPROTO15243 131 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 IGHG4P01861 327 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 CCL20P78556 96 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 ICAM4Q14773 271 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 HAPLN4Q86UW8 402 aa5.92□□□□□ -1.46
SCN9A-202ENST00000409435 IGKV1D-43A0A0B4J1Z2 117 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms