RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PRR31Q5SQ13 230 aa13.62□□□□□ -0.23
SDC1-203ENST00000403076 C17orf77Q96MU5 243 aa13.62□□□□□ -0.23
SDC1-203ENST00000403076 A0A087X0K7 114 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 TRAV25A0A0B4J276 109 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 PSMB3P49720 205 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 CCL20P78556 96 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 CLLU1Q5K131 121 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 OR2K2Q8NGT1 345 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 LYPD6BQ8NI32 183 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 MS4A6AQ9H2W1 248 aa13.61□□□□□ -0.23
SDC1-203ENST00000403076 TRBV19A0A075B6N1 114 aa13.6□□□□□ -0.23
SDC1-203ENST00000403076 TSPAN4O14817 238 aa13.6□□□□□ -0.23
SDC1-203ENST00000403076 LCN12Q6JVE5 192 aa13.6□□□□□ -0.23
SDC1-203ENST00000403076 C16orf92Q96LL3 132 aa13.6□□□□□ -0.23
SDC1-203ENST00000403076 IZUMO1RA6ND01 250 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 PPT1P50897 306 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 UBE2G2P60604 165 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 RANP62826 216 aaKnown RBP13.59□□□□□ -0.23
SDC1-203ENST00000403076 GPR61Q9BZJ8 451 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 GNG13Q9P2W3 67 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 NOTCH3Q9UM47 2321 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 IFNA1P01562 189 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 PDE6HQ13956 83 aa13.59□□□□□ -0.23
SDC1-203ENST00000403076 OR4C46A6NHA9 309 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 SLC17A3O00476 420 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 ID1P41134 155 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 PSG9Q00887 426 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 SUN5Q8TC36 379 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 SPAG8Q99932 426 aaPredicted RBP13.58□□□□□ -0.24
SDC1-203ENST00000403076 SLC50A1Q9BRV3 221 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 AAMDCQ9H7C9 122 aa13.58□□□□□ -0.24
SDC1-203ENST00000403076 PAGE4O60829 102 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 NDUFB4O95168 129 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 SAMD13Q5VXD3 122 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 CST9LP1Q5W188 147 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 IGFL4Q6B9Z1 124 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 MANBALQ9NQG1 85 aa13.57□□□□□ -0.24
SDC1-203ENST00000403076 K7EQG2 157 aa13.56□□□□□ -0.24
SDC1-203ENST00000403076 ZNF253O75346 499 aa13.56□□□□□ -0.24
SDC1-203ENST00000403076 HAGHQ16775 308 aa13.56□□□□□ -0.24
SDC1-203ENST00000403076 DCANP1Q8TF63 244 aa13.56□□□□□ -0.24
SDC1-203ENST00000403076 Q9H3A6 140 aa13.56□□□□□ -0.24
SDC1-203ENST00000403076 ZNF331Q9NQX6 463 aaPredicted RBP13.56□□□□□ -0.24
SDC1-203ENST00000403076 VWFP04275 2813 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 TRAV2A0A0B4J234 112 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 A0A1W2PRE2 83 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 PMS2P11Q13670 270 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 ICAM4Q14773 271 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 OXLD1Q5BKU9 147 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 LYPD1Q8N2G4 141 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 EXOC3-AS1Q8N2X6 119 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 LINC00052Q96N35 136 aa13.55□□□□□ -0.24
SDC1-203ENST00000403076 YTHDF2Q9Y5A9 579 aaKnown RBP13.55□□□□□ -0.24
SDC1-203ENST00000403076 PGPA6NDG6 321 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 FAM74A7A6NL05 159 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 ISLRO14498 428 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 SNRPD3P62318 126 aaKnown RBP13.54□□□□□ -0.24
SDC1-203ENST00000403076 SUMO1P63165 101 aaKnown RBP13.54□□□□□ -0.24
SDC1-203ENST00000403076 OTORQ9NRC9 128 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 TRAV8-2A0A0B4J237 113 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 SOCS3O14543 225 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 ZNF688P0C7X2 276 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 RNF182Q8N6D2 247 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 EIF5A2Q9GZV4 153 aaKnown RBP13.54□□□□□ -0.24
SDC1-203ENST00000403076 CLEC5AQ9NY25 188 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 ARL2-SNX15V9GYD0 113 aa13.54□□□□□ -0.24
SDC1-203ENST00000403076 RBFOX3A6NFN3 312 aa13.53□□□□□ -0.24
SDC1-203ENST00000403076 SLC25A5P05141 298 aaKnown RBP13.53□□□□□ -0.24
SDC1-203ENST00000403076 BCL2P10415 239 aa13.53□□□□□ -0.24
SDC1-203ENST00000403076 HLA-DMBP28068 263 aa13.53□□□□□ -0.24
SDC1-203ENST00000403076 TAGLN2P37802 199 aaKnown RBP13.53□□□□□ -0.24
SDC1-203ENST00000403076 CMTM2Q8TAZ6 248 aa13.53□□□□□ -0.24
SDC1-203ENST00000403076 NKX6-2Q9C056 277 aaPredicted RBP13.53□□□□□ -0.24
SDC1-203ENST00000403076 C11orf94C9JXX5 98 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 WIPF1O43516 503 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 CSN1S1P47710 185 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 PSG3Q16557 428 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 PSMG4Q5JS54 123 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 TOR2AQ5JU69 321 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 FAM24BQ8N5W8 94 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 FAM210AQ96ND0 272 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 RPH3ALQ9UNE2 315 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 PRELID1Q9Y255 219 aa13.52□□□□□ -0.25
SDC1-203ENST00000403076 ZNF256Q9Y2P7 627 aaPredicted RBP13.52□□□□□ -0.25
SDC1-203ENST00000403076 GGTLC3B5MD39 225 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 M0R3E3 92 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 ATP5G3P48201 142 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 ZNF738Q8NE65 137 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 RXFP4Q8TDU9 374 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 RARRES2Q99969 163 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 MED9Q9NWA0 146 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 VAX2Q9UIW0 290 aa13.51□□□□□ -0.25
SDC1-203ENST00000403076 LOC102723971A0A1B0GUV8 181 aa13.5□□□□□ -0.25
SDC1-203ENST00000403076 PRB4P10163 310 aaPredicted RBP13.5□□□□□ -0.25
SDC1-203ENST00000403076 CMC4P56277 68 aaPredicted RBP13.5□□□□□ -0.25
SDC1-203ENST00000403076 C20orf173Q96LM9 149 aa13.5□□□□□ -0.25
SDC1-203ENST00000403076 TXNDC17Q9BRA2 123 aa13.5□□□□□ -0.25
SDC1-203ENST00000403076 ZNF705FA8MVS1 300 aaPredicted RBP13.49□□□□□ -0.25
SDC1-203ENST00000403076 DEFB131AP59861 70 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms