RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TPT1P13693 172 aaKnown RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 C4BPBP20851 252 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 NKX2-5P52952 324 aaPredicted RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 ACOT6Q3I5F7 207 aaPredicted RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 ZFAND6Q6FIF0 208 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 LCN12Q6JVE5 192 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 RPP25LQ8N5L8 163 aaKnown RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 DCANP1Q8TF63 244 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 GRAMD2BQ96HH9 432 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 RCHY1Q96PM5 261 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 SPAG8Q99932 426 aaPredicted RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 FAM110AQ9BQ89 295 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 SCRT1Q9BWW7 348 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 ZNF471Q9BX82 626 aaPredicted RBP6.86□□□□□ -1.31
VPS53-203ENST00000401468 WFDC10AQ9H1F0 79 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 TMEM14CQ9P0S9 112 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 DOK5Q9P104 306 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 RYR1P21817 5038 aa6.86□□□□□ -1.31
VPS53-203ENST00000401468 IGHV3-49A0A0A0MS15 119 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 BOLA2-SMG1P6H3BVE0 249 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 SOCS3O14543 225 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 IGLC2P0DOY2 106 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 RPL7P18124 248 aaKnown RBP6.85□□□□□ -1.31
VPS53-203ENST00000401468 RAB2AP61019 212 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 RHOBP62745 196 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 TMEM41BQ5BJD5 291 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 FAM78BQ5VT40 261 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 SIGLEC15Q6ZMC9 328 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 TCF24Q7RTU0 167 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 SUN5Q8TC36 379 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 DYNLRB2Q8TF09 96 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 PHYHIPLQ96FC7 376 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 SLC25A2Q9BXI2 301 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 KRTAP4-11Q9BYQ6 195 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 RPRMQ9NS64 109 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 ZMAT5Q9UDW3 170 aaKnown RBP6.85□□□□□ -1.31
VPS53-203ENST00000401468 FUT9Q9Y231 359 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 CSMD3Q7Z407 3707 aa6.85□□□□□ -1.31
VPS53-203ENST00000401468 IGHV3OR16-13A0A075B7E8 117 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 IGHV3-74A0A0B4J1X5 117 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 IGHV3-66A0A0C4DH42 116 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 UMAD1C9J7I0 102 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 K7EQG2 157 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 IGHV4-30-4P0DP06 118 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 MEOX2P50222 304 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 LEMD1Q68G75 181 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 DPPA3Q6W0C5 159 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 BPIFA4PQ86YQ2 179 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 STXBP6Q8NFX7 210 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 OR10G4Q8NGN3 311 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 OR10G9Q8NGN4 311 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 OR10G7Q8NGN6 311 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 ZNF503Q96F45 646 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 C20orf173Q96LM9 149 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 MS4A6AQ9H2W1 248 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 HRH4Q9H3N8 390 aa6.84□□□□□ -1.31
VPS53-203ENST00000401468 AGRNO00468 2067 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 ZNF253O75346 499 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 STAG3L2P0CL84 134 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 STAG3L3P0CL85 134 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 GALR1P47211 349 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 RAB5CP51148 216 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 PDE6HQ13956 83 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 ZNF726P1Q15940 193 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 SAMD13Q5VXD3 122 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 SPATA31B1PQ5VZV4 182 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 EIF5AL1Q6IS14 154 aaKnown RBP6.83□□□□□ -1.32
VPS53-203ENST00000401468 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 MIR17HGQ75NE6 70 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 OR8I2Q8N0Y5 310 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 Q8N1Y9 231 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 RAB24Q969Q5 203 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 SAT2Q96F10 170 aaPredicted RBP6.83□□□□□ -1.32
VPS53-203ENST00000401468 NRN1Q9NPD7 142 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 HERC2O95714 4834 aa6.83□□□□□ -1.32
VPS53-203ENST00000401468 TRAV5A0A0B4J249 113 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 CTXND1A0A1B0GTU2 59 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 OR4C46A6NHA9 309 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 H3BQ15 152 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 NHLRC4P0CG21 123 aaPredicted RBP6.82□□□□□ -1.32
VPS53-203ENST00000401468 CDC34P49427 236 aaPredicted RBP6.82□□□□□ -1.32
VPS53-203ENST00000401468 SULT1A2P50226 295 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 TAS2R45P59539 299 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 PAFAH1B2P68402 229 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 GUK1Q16774 197 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 KHDC3LQ587J8 217 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 AKR1C8PQ5T2L2 129 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 PQLC2Q6ZP29 291 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 RBPMS2Q6ZRY4 209 aaKnown RBP6.82□□□□□ -1.32
VPS53-203ENST00000401468 SSX7Q7RTT5 188 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 TMED6Q8WW62 240 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 MBD3L1Q8WWY6 194 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 FXYD5Q96DB9 178 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 SLC25A22Q9H936 323 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 DNAH1Q9P2D7 4330 aa6.82□□□□□ -1.32
VPS53-203ENST00000401468 TRBV19A0A075B6N1 114 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 ISLRO14498 428 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 NDUFB4O95168 129 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 HIST1H1EP10412 219 aaKnown RBP6.81□□□□□ -1.32
VPS53-203ENST00000401468 PSMB3P49720 205 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms